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Cluster: HRGMv2_3505_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3505_15 HRGMv2_3505_15_13 16073 16747 + 9.B.18.1.2
pfam HRGMv2_3505_15 HRGMv2_3505_15_14 16744 17616 + 3Beta_HSD | Epimerase
CAZyme HRGMv2_3505_15 HRGMv2_3505_15_15 17613 18779 + GT4
CAZyme HRGMv2_3505_15 HRGMv2_3505_15_16 18819 19550 - GT32
pfam HRGMv2_3505_15 HRGMv2_3505_15_17 19575 20804 - UPF0020 | Cons_hypoth95 | MTS | PrmA | Methyltrans_SAM | Methyltransf_25 | Methyltransf_31 | PUA_3
NULL(UNKNOWN) HRGMv2_3505_15 HRGMv2_3505_15_18 20954 21982 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3505_15 HRGMv2_3505_15_19 22004 22507 - 2.A.88.3.1
Gene ID: HRGMv2_3505_15_13
Type: TC
Location: 16073 - 16747 (+)
Gene ID: HRGMv2_3505_15_14
Type: pfam
Location: 16744 - 17616 (+)
Gene ID: HRGMv2_3505_15_15
Type: CAZyme
Location: 17613 - 18779 (+)
Gene ID: HRGMv2_3505_15_16
Type: CAZyme
Location: 18819 - 19550 (-)
Gene ID: HRGMv2_3505_15_17
Type: pfam
Location: 19575 - 20804 (-)
Gene ID: HRGMv2_3505_15_18
Type:
Location: 20954 - 21982 (-)
Gene ID: HRGMv2_3505_15_19
Type: TC
Location: 22004 - 22507 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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