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Cluster: HRGMv2_3505_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3505_20 HRGMv2_3505_20_1 2 583 - 3.A.1.5.39
TC HRGMv2_3505_20 HRGMv2_3505_20_2 598 1527 - 3.A.1.5.11
TC HRGMv2_3505_20 HRGMv2_3505_20_3 1696 3216 - 3.A.1.5.27
TF HRGMv2_3505_20 HRGMv2_3505_20_4 3909 4556 + GntR
pfam HRGMv2_3505_20 HRGMv2_3505_20_5 4705 5682 + OpuAC
TC HRGMv2_3505_20 HRGMv2_3505_20_6 5719 6621 + 3.A.1.12.6
TC HRGMv2_3505_20 HRGMv2_3505_20_7 6602 7789 + 3.A.1.12.9
CAZyme HRGMv2_3505_20 HRGMv2_3505_20_8 7964 10174 - GT51
Gene ID: HRGMv2_3505_20_1
Type: TC
Location: 2 - 583 (-)
Gene ID: HRGMv2_3505_20_2
Type: TC
Location: 598 - 1527 (-)
Gene ID: HRGMv2_3505_20_3
Type: TC
Location: 1696 - 3216 (-)
Gene ID: HRGMv2_3505_20_4
Type: TF
Location: 3909 - 4556 (+)
Gene ID: HRGMv2_3505_20_5
Type: pfam
Location: 4705 - 5682 (+)
Gene ID: HRGMv2_3505_20_6
Type: TC
Location: 5719 - 6621 (+)
Gene ID: HRGMv2_3505_20_7
Type: TC
Location: 6602 - 7789 (+)
Gene ID: HRGMv2_3505_20_8
Type: CAZyme
Location: 7964 - 10174 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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