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Cluster: HRGMv2_3498_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3498_7 HRGMv2_3498_7_24 19659 21554 + GT2
TC HRGMv2_3498_7 HRGMv2_3498_7_25 21912 22841 - 3.A.1.15.15
TC HRGMv2_3498_7 HRGMv2_3498_7_26 22838 23674 - 3.A.1.15.15
TC HRGMv2_3498_7 HRGMv2_3498_7_27 23667 24410 - 3.A.1.15.15
TC HRGMv2_3498_7 HRGMv2_3498_7_28 24669 25868 + 9.B.10.1.1
TC HRGMv2_3498_7 HRGMv2_3498_7_29 26094 27455 + 2.A.26.1.9
pfam HRGMv2_3498_7 HRGMv2_3498_7_30 27811 28503 + Methyltransf_9 | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31
TC HRGMv2_3498_7 HRGMv2_3498_7_31 28500 30053 + 3.A.1.5.40
TC HRGMv2_3498_7 HRGMv2_3498_7_32 30056 31012 + 3.A.1.5.33
TC HRGMv2_3498_7 HRGMv2_3498_7_33 31012 31779 + 3.A.1.5.3
TC HRGMv2_3498_7 HRGMv2_3498_7_34 31746 32036 + 3.A.1.5.33
TC HRGMv2_3498_7 HRGMv2_3498_7_35 32033 32515 + 3.A.1.5.24
TC HRGMv2_3498_7 HRGMv2_3498_7_36 32508 33143 + 3.A.1.5.3
TC HRGMv2_3498_7 HRGMv2_3498_7_37 33324 34376 + 2.A.1.51.1
NULL(UNKNOWN) HRGMv2_3498_7 HRGMv2_3498_7_38 34531 34755 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_3498_7 HRGMv2_3498_7_39 34865 35725 + Patatin
TC HRGMv2_3498_7 HRGMv2_3498_7_40 35834 37159 - 2.A.1.3.11
TF HRGMv2_3498_7 HRGMv2_3498_7_41 37302 37733 + MerR
pfam HRGMv2_3498_7 HRGMv2_3498_7_42 37752 38183 + PTPS
TC HRGMv2_3498_7 HRGMv2_3498_7_43 38341 39357 + 9.A.40.2.1
Gene ID: HRGMv2_3498_7_24
Type: CAZyme
Location: 19659 - 21554 (+)
Gene ID: HRGMv2_3498_7_25
Type: TC
Location: 21912 - 22841 (-)
Gene ID: HRGMv2_3498_7_26
Type: TC
Location: 22838 - 23674 (-)
Gene ID: HRGMv2_3498_7_27
Type: TC
Location: 23667 - 24410 (-)
Gene ID: HRGMv2_3498_7_28
Type: TC
Location: 24669 - 25868 (+)
Gene ID: HRGMv2_3498_7_29
Type: TC
Location: 26094 - 27455 (+)
Gene ID: HRGMv2_3498_7_30
Type: pfam
Location: 27811 - 28503 (+)
Gene ID: HRGMv2_3498_7_31
Type: TC
Location: 28500 - 30053 (+)
Gene ID: HRGMv2_3498_7_32
Type: TC
Location: 30056 - 31012 (+)
Gene ID: HRGMv2_3498_7_33
Type: TC
Location: 31012 - 31779 (+)
Gene ID: HRGMv2_3498_7_34
Type: TC
Location: 31746 - 32036 (+)
Gene ID: HRGMv2_3498_7_35
Type: TC
Location: 32033 - 32515 (+)
Gene ID: HRGMv2_3498_7_36
Type: TC
Location: 32508 - 33143 (+)
Gene ID: HRGMv2_3498_7_37
Type: TC
Location: 33324 - 34376 (+)
Gene ID: HRGMv2_3498_7_38
Type:
Location: 34531 - 34755 (+)
Gene ID: HRGMv2_3498_7_39
Type: pfam
Location: 34865 - 35725 (+)
Gene ID: HRGMv2_3498_7_40
Type: TC
Location: 35834 - 37159 (-)
Gene ID: HRGMv2_3498_7_41
Type: TF
Location: 37302 - 37733 (+)
Gene ID: HRGMv2_3498_7_42
Type: pfam
Location: 37752 - 38183 (+)
Gene ID: HRGMv2_3498_7_43
Type: TC
Location: 38341 - 39357 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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