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Cluster: HRGMv2_3498_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3498_5 HRGMv2_3498_5_15 16792 18501 + 4.C.1.1.4
pfam HRGMv2_3498_5 HRGMv2_3498_5_16 18835 20502 + FTHFS
CAZyme HRGMv2_3498_5 HRGMv2_3498_5_17 20645 21559 - GT51
pfam HRGMv2_3498_5 HRGMv2_3498_5_18 21942 23204 + tRNA-synt_1b | S4 | SYY_C-terminal
TF HRGMv2_3498_5 HRGMv2_3498_5_19 23329 23799 + MarR
TC HRGMv2_3498_5 HRGMv2_3498_5_20 23919 25328 + 2.A.1.3.33
peptidase HRGMv2_3498_5 HRGMv2_3498_5_21 25408 26685 - S01.UPC
pfam HRGMv2_3498_5 HRGMv2_3498_5_22 26853 27476 + Acyltransferase
TC HRGMv2_3498_5 HRGMv2_3498_5_23 27812 29275 + 4.A.1.1.7
Gene ID: HRGMv2_3498_5_15
Type: TC
Location: 16792 - 18501 (+)
Gene ID: HRGMv2_3498_5_16
Type: pfam
Location: 18835 - 20502 (+)
Gene ID: HRGMv2_3498_5_17
Type: CAZyme
Location: 20645 - 21559 (-)
Gene ID: HRGMv2_3498_5_18
Type: pfam
Location: 21942 - 23204 (+)
Gene ID: HRGMv2_3498_5_19
Type: TF
Location: 23329 - 23799 (+)
Gene ID: HRGMv2_3498_5_20
Type: TC
Location: 23919 - 25328 (+)
Gene ID: HRGMv2_3498_5_21
Type: peptidase
Location: 25408 - 26685 (-)
Gene ID: HRGMv2_3498_5_22
Type: pfam
Location: 26853 - 27476 (+)
Gene ID: HRGMv2_3498_5_23
Type: TC
Location: 27812 - 29275 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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