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Cluster: HRGMv2_3498_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3498_4 HRGMv2_3498_4_75 70749 71315 + 9.B.46.1.1
pfam HRGMv2_3498_4 HRGMv2_3498_4_76 71318 71458 + AgrD
TC HRGMv2_3498_4 HRGMv2_3498_4_77 71485 72768 + 9.B.14.1.13
TF HRGMv2_3498_4 HRGMv2_3498_4_78 72787 73503 + LytTR
STP HRGMv2_3498_4 HRGMv2_3498_4_79 73620 74585 - PfkB
CAZyme HRGMv2_3498_4 HRGMv2_3498_4_80 74589 76073 - GH32
TF HRGMv2_3498_4 HRGMv2_3498_4_81 76158 77117 - LacI
TC HRGMv2_3498_4 HRGMv2_3498_4_82 77217 78461 - 1.A.11.1.4
TC HRGMv2_3498_4 HRGMv2_3498_4_83 78583 78807 - 9.B.102.1.12
TC HRGMv2_3498_4 HRGMv2_3498_4_84 78827 79924 - 9.B.102.1.2
TF HRGMv2_3498_4 HRGMv2_3498_4_85 80121 80759 - 0045030
TC HRGMv2_3498_4 HRGMv2_3498_4_86 81000 82943 + 3.A.1.121.4
Gene ID: HRGMv2_3498_4_75
Type: TC
Location: 70749 - 71315 (+)
Gene ID: HRGMv2_3498_4_76
Type: pfam
Location: 71318 - 71458 (+)
Gene ID: HRGMv2_3498_4_77
Type: TC
Location: 71485 - 72768 (+)
Gene ID: HRGMv2_3498_4_78
Type: TF
Location: 72787 - 73503 (+)
Gene ID: HRGMv2_3498_4_79
Type: STP
Location: 73620 - 74585 (-)
Gene ID: HRGMv2_3498_4_80
Type: CAZyme
Location: 74589 - 76073 (-)
Gene ID: HRGMv2_3498_4_81
Type: TF
Location: 76158 - 77117 (-)
Gene ID: HRGMv2_3498_4_82
Type: TC
Location: 77217 - 78461 (-)
Gene ID: HRGMv2_3498_4_83
Type: TC
Location: 78583 - 78807 (-)
Gene ID: HRGMv2_3498_4_84
Type: TC
Location: 78827 - 79924 (-)
Gene ID: HRGMv2_3498_4_85
Type: TF
Location: 80121 - 80759 (-)
Gene ID: HRGMv2_3498_4_86
Type: TC
Location: 81000 - 82943 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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