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Cluster: HRGMv2_3498_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3498_3 HRGMv2_3498_3_62 52409 53269 - CBM50
pfam HRGMv2_3498_3 HRGMv2_3498_3_63 53527 54525 - RF-1 | PCRF
TC HRGMv2_3498_3 HRGMv2_3498_3_64 54747 57284 - 3.A.5.1.1
pfam HRGMv2_3498_3 HRGMv2_3498_3_65 57715 58293 - Ribosomal_S30AE | Ribosom_S30AE_C
TC HRGMv2_3498_3 HRGMv2_3498_3_66 58355 59029 - 3.A.11.1.4
TC HRGMv2_3498_3 HRGMv2_3498_3_67 59022 60278 - 3.A.11.1.1
pfam HRGMv2_3498_3 HRGMv2_3498_3_68 60424 61290 - DegV
pfam HRGMv2_3498_3 HRGMv2_3498_3_69 61434 62075 + UPF0029 | DUF1949
TC HRGMv2_3498_3 HRGMv2_3498_3_70 62136 63221 - 9.B.146.1.7
TC HRGMv2_3498_3 HRGMv2_3498_3_71 63586 64656 + 9.B.34.1.1
TC HRGMv2_3498_3 HRGMv2_3498_3_72 64880 65641 + 2.A.79.1.4
TC HRGMv2_3498_3 HRGMv2_3498_3_73 65658 66152 + 2.A.79.1.7
Gene ID: HRGMv2_3498_3_62
Type: CAZyme
Location: 52409 - 53269 (-)
Gene ID: HRGMv2_3498_3_63
Type: pfam
Location: 53527 - 54525 (-)
Gene ID: HRGMv2_3498_3_64
Type: TC
Location: 54747 - 57284 (-)
Gene ID: HRGMv2_3498_3_65
Type: pfam
Location: 57715 - 58293 (-)
Gene ID: HRGMv2_3498_3_66
Type: TC
Location: 58355 - 59029 (-)
Gene ID: HRGMv2_3498_3_67
Type: TC
Location: 59022 - 60278 (-)
Gene ID: HRGMv2_3498_3_68
Type: pfam
Location: 60424 - 61290 (-)
Gene ID: HRGMv2_3498_3_69
Type: pfam
Location: 61434 - 62075 (+)
Gene ID: HRGMv2_3498_3_70
Type: TC
Location: 62136 - 63221 (-)
Gene ID: HRGMv2_3498_3_71
Type: TC
Location: 63586 - 64656 (+)
Gene ID: HRGMv2_3498_3_72
Type: TC
Location: 64880 - 65641 (+)
Gene ID: HRGMv2_3498_3_73
Type: TC
Location: 65658 - 66152 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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