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Cluster: HRGMv2_3498_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3498_15 HRGMv2_3498_15_29 26674 27825 + GT4
TC HRGMv2_3498_15 HRGMv2_3498_15_30 27955 29556 - 2.A.14.1.1
pfam HRGMv2_3498_15 HRGMv2_3498_15_31 29930 31621 + Glyphos_transf
pfam HRGMv2_3498_15 HRGMv2_3498_15_32 31807 32325 - Acetyltransf_1 | Acetyltransf_4 | Acetyltransf_7 | Acetyltransf_10
TC HRGMv2_3498_15 HRGMv2_3498_15_33 32507 32719 + 2.A.64.3.2
TC HRGMv2_3498_15 HRGMv2_3498_15_34 32661 33416 + 2.A.64.3.2
TC HRGMv2_3498_15 HRGMv2_3498_15_35 33485 35230 - 2.A.108.2.5
pfam HRGMv2_3498_15 HRGMv2_3498_15_36 35211 36437 - Dyp_perox_N | Dyp_perox_C
TC HRGMv2_3498_15 HRGMv2_3498_15_37 36434 37297 - 2.A.108.2.3
Gene ID: HRGMv2_3498_15_29
Type: CAZyme
Location: 26674 - 27825 (+)
Gene ID: HRGMv2_3498_15_30
Type: TC
Location: 27955 - 29556 (-)
Gene ID: HRGMv2_3498_15_31
Type: pfam
Location: 29930 - 31621 (+)
Gene ID: HRGMv2_3498_15_32
Type: pfam
Location: 31807 - 32325 (-)
Gene ID: HRGMv2_3498_15_33
Type: TC
Location: 32507 - 32719 (+)
Gene ID: HRGMv2_3498_15_34
Type: TC
Location: 32661 - 33416 (+)
Gene ID: HRGMv2_3498_15_35
Type: TC
Location: 33485 - 35230 (-)
Gene ID: HRGMv2_3498_15_36
Type: pfam
Location: 35211 - 36437 (-)
Gene ID: HRGMv2_3498_15_37
Type: TC
Location: 36434 - 37297 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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