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Cluster: HRGMv2_3497_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3497_4 HRGMv2_3497_4_42 40769 41530 + 3.A.1.134.7
TC HRGMv2_3497_4 HRGMv2_3497_4_43 41520 43409 + 3.A.1.134.7
pfam HRGMv2_3497_4 HRGMv2_3497_4_44 43482 43871 - DUF1398
pfam HRGMv2_3497_4 HRGMv2_3497_4_45 44308 44925 + PhoU_div
TC HRGMv2_3497_4 HRGMv2_3497_4_46 44941 45951 + 2.A.20.1.7
pfam HRGMv2_3497_4 HRGMv2_3497_4_47 46061 46831 + Patatin
NULL(UNKNOWN) HRGMv2_3497_4 HRGMv2_3497_4_48 46812 46910 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3497_4 HRGMv2_3497_4_49 47067 47888 - CBM50 | CBM50
Gene ID: HRGMv2_3497_4_42
Type: TC
Location: 40769 - 41530 (+)
Gene ID: HRGMv2_3497_4_43
Type: TC
Location: 41520 - 43409 (+)
Gene ID: HRGMv2_3497_4_44
Type: pfam
Location: 43482 - 43871 (-)
Gene ID: HRGMv2_3497_4_45
Type: pfam
Location: 44308 - 44925 (+)
Gene ID: HRGMv2_3497_4_46
Type: TC
Location: 44941 - 45951 (+)
Gene ID: HRGMv2_3497_4_47
Type: pfam
Location: 46061 - 46831 (+)
Gene ID: HRGMv2_3497_4_48
Type:
Location: 46812 - 46910 (+)
Gene ID: HRGMv2_3497_4_49
Type: CAZyme
Location: 47067 - 47888 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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