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Cluster: HRGMv2_3497_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3497_15 HRGMv2_3497_15_38 28096 28659 + 9.B.46.1.1
pfam HRGMv2_3497_15 HRGMv2_3497_15_39 28664 28804 + AgrD
TC HRGMv2_3497_15 HRGMv2_3497_15_40 28834 30123 + 9.B.14.1.13
TF HRGMv2_3497_15 HRGMv2_3497_15_41 30136 30852 + LytTR
STP HRGMv2_3497_15 HRGMv2_3497_15_42 30911 31867 - PfkB
CAZyme HRGMv2_3497_15 HRGMv2_3497_15_43 31864 33348 - GH32
TF HRGMv2_3497_15 HRGMv2_3497_15_44 33649 34599 - LacI
TC HRGMv2_3497_15 HRGMv2_3497_15_45 34740 34964 - 9.B.102.1.12
TC HRGMv2_3497_15 HRGMv2_3497_15_46 34977 36065 - 9.B.102.1.2
NULL(UNKNOWN) HRGMv2_3497_15 HRGMv2_3497_15_47 36236 36541 - NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_3497_15 HRGMv2_3497_15_48 36568 37212 - 0045030
TC HRGMv2_3497_15 HRGMv2_3497_15_49 37471 39405 + 3.A.1.120.6
Gene ID: HRGMv2_3497_15_38
Type: TC
Location: 28096 - 28659 (+)
Gene ID: HRGMv2_3497_15_39
Type: pfam
Location: 28664 - 28804 (+)
Gene ID: HRGMv2_3497_15_40
Type: TC
Location: 28834 - 30123 (+)
Gene ID: HRGMv2_3497_15_41
Type: TF
Location: 30136 - 30852 (+)
Gene ID: HRGMv2_3497_15_42
Type: STP
Location: 30911 - 31867 (-)
Gene ID: HRGMv2_3497_15_43
Type: CAZyme
Location: 31864 - 33348 (-)
Gene ID: HRGMv2_3497_15_44
Type: TF
Location: 33649 - 34599 (-)
Gene ID: HRGMv2_3497_15_45
Type: TC
Location: 34740 - 34964 (-)
Gene ID: HRGMv2_3497_15_46
Type: TC
Location: 34977 - 36065 (-)
Gene ID: HRGMv2_3497_15_47
Type:
Location: 36236 - 36541 (-)
Gene ID: HRGMv2_3497_15_48
Type: TF
Location: 36568 - 37212 (-)
Gene ID: HRGMv2_3497_15_49
Type: TC
Location: 37471 - 39405 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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