Cluster: HRGMv2_3497_CGC13
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3497
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3497_6 | HRGMv2_3497_6_56 | 80624 | 82450 | - | CBM50 |
| TC | HRGMv2_3497_6 | HRGMv2_3497_6_57 | 82607 | 83986 | - | 2.A.16.2.2 |
| pfam | HRGMv2_3497_6 | HRGMv2_3497_6_58 | 83967 | 84935 | - | HTH_40 |
| pfam | HRGMv2_3497_6 | HRGMv2_3497_6_59 | 85041 | 85295 | + | Fer4_13 | Fer4_15 |
| TC | HRGMv2_3497_6 | HRGMv2_3497_6_60 | 85347 | 85895 | - | 2.A.87.1.3 |
Gene ID: HRGMv2_3497_6_56
Type: CAZyme
Location: 80624 - 82450 (-)
Type: CAZyme
Location: 80624 - 82450 (-)
Gene ID: HRGMv2_3497_6_57
Type: TC
Location: 82607 - 83986 (-)
Type: TC
Location: 82607 - 83986 (-)
Gene ID: HRGMv2_3497_6_58
Type: pfam
Location: 83967 - 84935 (-)
Type: pfam
Location: 83967 - 84935 (-)
Gene ID: HRGMv2_3497_6_59
Type: pfam
Location: 85041 - 85295 (+)
Type: pfam
Location: 85041 - 85295 (+)
Gene ID: HRGMv2_3497_6_60
Type: TC
Location: 85347 - 85895 (-)
Type: TC
Location: 85347 - 85895 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Staphylococcales
Family
Staphylococcaceae
Genus
Staphylococcus
Species
Staphylococcus warneri
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.