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Cluster: HRGMv2_3484_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3484_2 HRGMv2_3484_2_180 212858 214207 - 2.A.1.14.3
TF HRGMv2_3484_2 HRGMv2_3484_2_181 214774 216450 + 0037176
TC HRGMv2_3484_2 HRGMv2_3484_2_182 216727 216993 + 8.A.8.1.6
TC HRGMv2_3484_2 HRGMv2_3484_2_183 217126 218841 + 8.A.7.1.1
TC HRGMv2_3484_2 HRGMv2_3484_2_184 219021 220394 + 2.A.22.5.3
TC HRGMv2_3484_2 HRGMv2_3484_2_185 220618 221943 - 1.B.23.1.23
STP HRGMv2_3484_2 HRGMv2_3484_2_186 222240 222911 + TetR_N
CAZyme HRGMv2_3484_2 HRGMv2_3484_2_187 222966 224111 + GH3
pfam HRGMv2_3484_2 HRGMv2_3484_2_188 224199 225053 - VitK2_biosynth
TF HRGMv2_3484_2 HRGMv2_3484_2_189 225293 225793 + MarR
TC HRGMv2_3484_2 HRGMv2_3484_2_190 225783 226865 + 2.A.6.2.27
TC HRGMv2_3484_2 HRGMv2_3484_2_191 226862 229906 + 2.A.6.2.17
Gene ID: HRGMv2_3484_2_180
Type: TC
Location: 212858 - 214207 (-)
Gene ID: HRGMv2_3484_2_181
Type: TF
Location: 214774 - 216450 (+)
Gene ID: HRGMv2_3484_2_182
Type: TC
Location: 216727 - 216993 (+)
Gene ID: HRGMv2_3484_2_183
Type: TC
Location: 217126 - 218841 (+)
Gene ID: HRGMv2_3484_2_184
Type: TC
Location: 219021 - 220394 (+)
Gene ID: HRGMv2_3484_2_185
Type: TC
Location: 220618 - 221943 (-)
Gene ID: HRGMv2_3484_2_186
Type: STP
Location: 222240 - 222911 (+)
Gene ID: HRGMv2_3484_2_187
Type: CAZyme
Location: 222966 - 224111 (+)
Gene ID: HRGMv2_3484_2_188
Type: pfam
Location: 224199 - 225053 (-)
Gene ID: HRGMv2_3484_2_189
Type: TF
Location: 225293 - 225793 (+)
Gene ID: HRGMv2_3484_2_190
Type: TC
Location: 225783 - 226865 (+)
Gene ID: HRGMv2_3484_2_191
Type: TC
Location: 226862 - 229906 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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