Cluster: HRGMv2_3447_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3447
- CGC Family ID: CGCFAM_10371
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3447_2 | HRGMv2_3447_2_139 | 156883 | 160587 | - | GH146 |
| TF | HRGMv2_3447_2 | HRGMv2_3447_2_140 | 160866 | 161720 | + | HTH_AraC | HTH_AraC |
| TC | HRGMv2_3447_2 | HRGMv2_3447_2_141 | 161835 | 163202 | - | 3.A.1.1.22 |
| pfam | HRGMv2_3447_2 | HRGMv2_3447_2_142 | 163207 | 164112 | - | IU_nuc_hydro |
| CAZyme | HRGMv2_3447_2 | HRGMv2_3447_2_143 | 164093 | 164800 | - | CE4 |
Gene ID: HRGMv2_3447_2_139
Type: CAZyme
Location: 156883 - 160587 (-)
Type: CAZyme
Location: 156883 - 160587 (-)
Gene ID: HRGMv2_3447_2_140
Type: TF
Location: 160866 - 161720 (+)
Type: TF
Location: 160866 - 161720 (+)
Gene ID: HRGMv2_3447_2_141
Type: TC
Location: 161835 - 163202 (-)
Type: TC
Location: 161835 - 163202 (-)
Gene ID: HRGMv2_3447_2_142
Type: pfam
Location: 163207 - 164112 (-)
Type: pfam
Location: 163207 - 164112 (-)
Gene ID: HRGMv2_3447_2_143
Type: CAZyme
Location: 164093 - 164800 (-)
Type: CAZyme
Location: 164093 - 164800 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
RFN20
Family
CAG-826
Genus
RUG131
Species
RUG131 sp934162685
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.