Cluster: HRGMv2_3447_CGC16
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_3447
- CGC Family ID: CGCFAM_01469
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3447_10 | HRGMv2_3447_10_16 | 20717 | 22645 | - | 3.A.1.135.5 |
| TC | HRGMv2_3447_10 | HRGMv2_3447_10_17 | 22645 | 24426 | - | 3.A.1.135.5 |
| TF | HRGMv2_3447_10 | HRGMv2_3447_10_18 | 24419 | 24913 | - | MarR |
| STP | HRGMv2_3447_10 | HRGMv2_3447_10_19 | 25040 | 26251 | - | Aminotran_1_2 |
| CAZyme | HRGMv2_3447_10 | HRGMv2_3447_10_20 | 26411 | 29143 | - | GH84 |
| pfam | HRGMv2_3447_10 | HRGMv2_3447_10_21 | 29143 | 30639 | - | LRR_5 | LRR_5 | LRR_5 | LRR_5 | LRR_8 |
| CAZyme | HRGMv2_3447_10 | HRGMv2_3447_10_22 | 30642 | 31775 | - | CE9 |
| sulfatase | HRGMv2_3447_10 | HRGMv2_3447_10_23 | 31780 | 32508 | - | S1_9 |
| CAZyme | HRGMv2_3447_10 | HRGMv2_3447_10_24 | 32514 | 35048 | - | GH94 |
| pfam | HRGMv2_3447_10 | HRGMv2_3447_10_25 | 35065 | 36480 | - | PGM_PMM_IV | PGM_PMM_I | PGM_PMM_II | PGM_PMM_III |
| pfam | HRGMv2_3447_10 | HRGMv2_3447_10_26 | 36512 | 37711 | - | Big_3 |
| TC | HRGMv2_3447_10 | HRGMv2_3447_10_27 | 37729 | 39003 | - | 3.A.1.1.26 |
| TF | HRGMv2_3447_10 | HRGMv2_3447_10_28 | 39006 | 40187 | - | 0040266 |
| peptidase | HRGMv2_3447_10 | HRGMv2_3447_10_29 | 40184 | 43180 | - | M26.UNW |
| TC | HRGMv2_3447_10 | HRGMv2_3447_10_30 | 43182 | 44069 | - | 3.A.1.1.18 |
| pfam | HRGMv2_3447_10 | HRGMv2_3447_10_31 | 44081 | 45064 | - | BPD_transp_1 |
| CAZyme | HRGMv2_3447_10 | HRGMv2_3447_10_32 | 45076 | 46467 | - | GH16 |
Gene ID: HRGMv2_3447_10_16
Type: TC
Location: 20717 - 22645 (-)
Type: TC
Location: 20717 - 22645 (-)
Gene ID: HRGMv2_3447_10_17
Type: TC
Location: 22645 - 24426 (-)
Type: TC
Location: 22645 - 24426 (-)
Gene ID: HRGMv2_3447_10_18
Type: TF
Location: 24419 - 24913 (-)
Type: TF
Location: 24419 - 24913 (-)
Gene ID: HRGMv2_3447_10_19
Type: STP
Location: 25040 - 26251 (-)
Type: STP
Location: 25040 - 26251 (-)
Gene ID: HRGMv2_3447_10_20
Type: CAZyme
Location: 26411 - 29143 (-)
Type: CAZyme
Location: 26411 - 29143 (-)
Gene ID: HRGMv2_3447_10_21
Type: pfam
Location: 29143 - 30639 (-)
Type: pfam
Location: 29143 - 30639 (-)
Gene ID: HRGMv2_3447_10_22
Type: CAZyme
Location: 30642 - 31775 (-)
Type: CAZyme
Location: 30642 - 31775 (-)
Gene ID: HRGMv2_3447_10_23
Type: sulfatase
Location: 31780 - 32508 (-)
Type: sulfatase
Location: 31780 - 32508 (-)
Gene ID: HRGMv2_3447_10_24
Type: CAZyme
Location: 32514 - 35048 (-)
Type: CAZyme
Location: 32514 - 35048 (-)
Gene ID: HRGMv2_3447_10_25
Type: pfam
Location: 35065 - 36480 (-)
Type: pfam
Location: 35065 - 36480 (-)
Gene ID: HRGMv2_3447_10_26
Type: pfam
Location: 36512 - 37711 (-)
Type: pfam
Location: 36512 - 37711 (-)
Gene ID: HRGMv2_3447_10_27
Type: TC
Location: 37729 - 39003 (-)
Type: TC
Location: 37729 - 39003 (-)
Gene ID: HRGMv2_3447_10_28
Type: TF
Location: 39006 - 40187 (-)
Type: TF
Location: 39006 - 40187 (-)
Gene ID: HRGMv2_3447_10_29
Type: peptidase
Location: 40184 - 43180 (-)
Type: peptidase
Location: 40184 - 43180 (-)
Gene ID: HRGMv2_3447_10_30
Type: TC
Location: 43182 - 44069 (-)
Type: TC
Location: 43182 - 44069 (-)
Gene ID: HRGMv2_3447_10_31
Type: pfam
Location: 44081 - 45064 (-)
Type: pfam
Location: 44081 - 45064 (-)
Gene ID: HRGMv2_3447_10_32
Type: CAZyme
Location: 45076 - 46467 (-)
Type: CAZyme
Location: 45076 - 46467 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
RFN20
Family
CAG-826
Genus
RUG131
Species
RUG131 sp934162685
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.