Cluster: HRGMv2_3406_CGC5
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3406
- CGC Family ID: CGCFAM_05807
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3406_12 | HRGMv2_3406_12_3 | 1657 | 2751 | - | GT28 |
| TC | HRGMv2_3406_12 | HRGMv2_3406_12_4 | 2893 | 3657 | - | 3.A.15.2.1 |
| TC | HRGMv2_3406_12 | HRGMv2_3406_12_5 | 3678 | 5042 | - | 3.A.11.1.3 |
| pfam | HRGMv2_3406_12 | HRGMv2_3406_12_6 | 5139 | 5639 | + | YqfQ |
| STP | HRGMv2_3406_12 | HRGMv2_3406_12_7 | 5678 | 6268 | - | HD |
| TC | HRGMv2_3406_12 | HRGMv2_3406_12_8 | 6279 | 7085 | - | 1.A.23.4.1 |
Gene ID: HRGMv2_3406_12_3
Type: CAZyme
Location: 1657 - 2751 (-)
Type: CAZyme
Location: 1657 - 2751 (-)
Gene ID: HRGMv2_3406_12_4
Type: TC
Location: 2893 - 3657 (-)
Type: TC
Location: 2893 - 3657 (-)
Gene ID: HRGMv2_3406_12_5
Type: TC
Location: 3678 - 5042 (-)
Type: TC
Location: 3678 - 5042 (-)
Gene ID: HRGMv2_3406_12_6
Type: pfam
Location: 5139 - 5639 (+)
Type: pfam
Location: 5139 - 5639 (+)
Gene ID: HRGMv2_3406_12_7
Type: STP
Location: 5678 - 6268 (-)
Type: STP
Location: 5678 - 6268 (-)
Gene ID: HRGMv2_3406_12_8
Type: TC
Location: 6279 - 7085 (-)
Type: TC
Location: 6279 - 7085 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
RF39
Family
UBA660
Genus
RUG11198
Species
RUG11198 sp934176955
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.