Cluster: HRGMv2_3406_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3406
- CGC Family ID: CGCFAM_00188
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3406_9 | HRGMv2_3406_9_26 | 26884 | 27909 | + | GT2 |
| pfam | HRGMv2_3406_9 | HRGMv2_3406_9_27 | 27972 | 28553 | + | VTT_dom |
| NULL(UNKNOWN) | HRGMv2_3406_9 | HRGMv2_3406_9_28 | 28605 | 29189 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3406_9 | HRGMv2_3406_9_29 | 29243 | 30460 | + | GH25 |
| TC | HRGMv2_3406_9 | HRGMv2_3406_9_30 | 30546 | 31853 | - | 3.A.5.1.1 |
Gene ID: HRGMv2_3406_9_26
Type: CAZyme
Location: 26884 - 27909 (+)
Type: CAZyme
Location: 26884 - 27909 (+)
Gene ID: HRGMv2_3406_9_27
Type: pfam
Location: 27972 - 28553 (+)
Type: pfam
Location: 27972 - 28553 (+)
Gene ID: HRGMv2_3406_9_28
Type:
Location: 28605 - 29189 (+)
Type:
Location: 28605 - 29189 (+)
Gene ID: HRGMv2_3406_9_29
Type: CAZyme
Location: 29243 - 30460 (+)
Type: CAZyme
Location: 29243 - 30460 (+)
Gene ID: HRGMv2_3406_9_30
Type: TC
Location: 30546 - 31853 (-)
Type: TC
Location: 30546 - 31853 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
RF39
Family
UBA660
Genus
RUG11198
Species
RUG11198 sp934176955
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.