Cluster: HRGMv2_3388_CGC1
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3388
- CGC Family ID: CGCFAM_10367
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3388_1 | HRGMv2_3388_1_80 | 80222 | 81256 | + | 9.B.146.1.1 |
| CAZyme | HRGMv2_3388_1 | HRGMv2_3388_1_81 | 81284 | 82246 | + | GT2 |
| STP | HRGMv2_3388_1 | HRGMv2_3388_1_82 | 82375 | 83352 | + | SBP_bac_1 |
| TC | HRGMv2_3388_1 | HRGMv2_3388_1_83 | 83345 | 84106 | + | 3.A.1.20.2 |
| pfam | HRGMv2_3388_1 | HRGMv2_3388_1_84 | 84103 | 85686 | + | BPD_transp_1 | BPD_transp_1 |
| TF | HRGMv2_3388_1 | HRGMv2_3388_1_85 | 85679 | 86569 | + | 0040266 |
| CAZyme | HRGMv2_3388_1 | HRGMv2_3388_1_86 | 86597 | 89497 | + | GT4 |
Gene ID: HRGMv2_3388_1_80
Type: TC
Location: 80222 - 81256 (+)
Type: TC
Location: 80222 - 81256 (+)
Gene ID: HRGMv2_3388_1_81
Type: CAZyme
Location: 81284 - 82246 (+)
Type: CAZyme
Location: 81284 - 82246 (+)
Gene ID: HRGMv2_3388_1_82
Type: STP
Location: 82375 - 83352 (+)
Type: STP
Location: 82375 - 83352 (+)
Gene ID: HRGMv2_3388_1_83
Type: TC
Location: 83345 - 84106 (+)
Type: TC
Location: 83345 - 84106 (+)
Gene ID: HRGMv2_3388_1_84
Type: pfam
Location: 84103 - 85686 (+)
Type: pfam
Location: 84103 - 85686 (+)
Gene ID: HRGMv2_3388_1_85
Type: TF
Location: 85679 - 86569 (+)
Type: TF
Location: 85679 - 86569 (+)
Gene ID: HRGMv2_3388_1_86
Type: CAZyme
Location: 86597 - 89497 (+)
Type: CAZyme
Location: 86597 - 89497 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
RF39
Family
UBA660
Genus
CAG-533
Species
CAG-533 sp900553855
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.