Cluster: HRGMv2_3340_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3340
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3340_41 | HRGMv2_3340_41_5 | 3235 | 4050 | - | 2.A.64.3.2 |
| pfam | HRGMv2_3340_41 | HRGMv2_3340_41_6 | 4043 | 4273 | - | TatA_B_E |
| pfam | HRGMv2_3340_41 | HRGMv2_3340_41_7 | 4276 | 4458 | - | TatA_B_E |
| TC | HRGMv2_3340_41 | HRGMv2_3340_41_8 | 4471 | 5163 | - | 9.B.149.1.11 |
| CAZyme | HRGMv2_3340_41 | HRGMv2_3340_41_9 | 5156 | 6196 | - | GH3 |
Gene ID: HRGMv2_3340_41_5
Type: TC
Location: 3235 - 4050 (-)
Type: TC
Location: 3235 - 4050 (-)
Gene ID: HRGMv2_3340_41_6
Type: pfam
Location: 4043 - 4273 (-)
Type: pfam
Location: 4043 - 4273 (-)
Gene ID: HRGMv2_3340_41_7
Type: pfam
Location: 4276 - 4458 (-)
Type: pfam
Location: 4276 - 4458 (-)
Gene ID: HRGMv2_3340_41_8
Type: TC
Location: 4471 - 5163 (-)
Type: TC
Location: 4471 - 5163 (-)
Gene ID: HRGMv2_3340_41_9
Type: CAZyme
Location: 5156 - 6196 (-)
Type: CAZyme
Location: 5156 - 6196 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
RF32
Family
CAG-977
Genus
CAKQWA01
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.