Cluster: HRGMv2_3340_CGC3
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3340
- CGC Family ID: CGCFAM_05868
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3340_15 | HRGMv2_3340_15_2 | 659 | 1801 | + | 2.A.6.2.47 |
| TC | HRGMv2_3340_15 | HRGMv2_3340_15_3 | 1812 | 6296 | + | 2.A.6.2.1 |
| NULL(UNKNOWN) | HRGMv2_3340_15 | HRGMv2_3340_15_4 | 6573 | 7163 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3340_15 | HRGMv2_3340_15_5 | 7236 | 8930 | + | GH103 |
Gene ID: HRGMv2_3340_15_2
Type: TC
Location: 659 - 1801 (+)
Type: TC
Location: 659 - 1801 (+)
Gene ID: HRGMv2_3340_15_3
Type: TC
Location: 1812 - 6296 (+)
Type: TC
Location: 1812 - 6296 (+)
Gene ID: HRGMv2_3340_15_4
Type:
Location: 6573 - 7163 (+)
Type:
Location: 6573 - 7163 (+)
Gene ID: HRGMv2_3340_15_5
Type: CAZyme
Location: 7236 - 8930 (+)
Type: CAZyme
Location: 7236 - 8930 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
RF32
Family
CAG-977
Genus
CAKQWA01
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.