Cluster: HRGMv2_3340_CGC1
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3340
- CGC Family ID: CGCFAM_10360
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3340_5 | HRGMv2_3340_5_6 | 5749 | 6969 | + | GT5 |
| pfam | HRGMv2_3340_5 | HRGMv2_3340_5_7 | 7014 | 7994 | - | DUF4340 |
| TC | HRGMv2_3340_5 | HRGMv2_3340_5_8 | 7991 | 10450 | - | 3.A.1.132.3 |
| TC | HRGMv2_3340_5 | HRGMv2_3340_5_9 | 10447 | 11403 | - | 3.A.1.132.4 |
| NULL(UNKNOWN) | HRGMv2_3340_5 | HRGMv2_3340_5_10 | 11488 | 11982 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3340_5 | HRGMv2_3340_5_11 | 12135 | 13367 | + | 1.B.9.1.1 |
Gene ID: HRGMv2_3340_5_6
Type: CAZyme
Location: 5749 - 6969 (+)
Type: CAZyme
Location: 5749 - 6969 (+)
Gene ID: HRGMv2_3340_5_7
Type: pfam
Location: 7014 - 7994 (-)
Type: pfam
Location: 7014 - 7994 (-)
Gene ID: HRGMv2_3340_5_8
Type: TC
Location: 7991 - 10450 (-)
Type: TC
Location: 7991 - 10450 (-)
Gene ID: HRGMv2_3340_5_9
Type: TC
Location: 10447 - 11403 (-)
Type: TC
Location: 10447 - 11403 (-)
Gene ID: HRGMv2_3340_5_10
Type:
Location: 11488 - 11982 (+)
Type:
Location: 11488 - 11982 (+)
Gene ID: HRGMv2_3340_5_11
Type: TC
Location: 12135 - 13367 (+)
Type: TC
Location: 12135 - 13367 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
RF32
Family
CAG-977
Genus
CAKQWA01
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.