Cluster: HRGMv2_3339_CGC5
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3339
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3339_15 | HRGMv2_3339_15_21 | 23514 | 24176 | - | 1.A.30.1.4 |
| TC | HRGMv2_3339_15 | HRGMv2_3339_15_22 | 24193 | 24981 | - | 1.A.30.1.2 |
| STP | HRGMv2_3339_15 | HRGMv2_3339_15_23 | 25225 | 27678 | + | EAL | GGDEF | PAS |
| pfam | HRGMv2_3339_15 | HRGMv2_3339_15_24 | 27754 | 28755 | + | DUF3944 |
| CAZyme | HRGMv2_3339_15 | HRGMv2_3339_15_25 | 28765 | 29457 | - | GT2 |
Gene ID: HRGMv2_3339_15_21
Type: TC
Location: 23514 - 24176 (-)
Type: TC
Location: 23514 - 24176 (-)
Gene ID: HRGMv2_3339_15_22
Type: TC
Location: 24193 - 24981 (-)
Type: TC
Location: 24193 - 24981 (-)
Gene ID: HRGMv2_3339_15_23
Type: STP
Location: 25225 - 27678 (+)
Type: STP
Location: 25225 - 27678 (+)
Gene ID: HRGMv2_3339_15_24
Type: pfam
Location: 27754 - 28755 (+)
Type: pfam
Location: 27754 - 28755 (+)
Gene ID: HRGMv2_3339_15_25
Type: CAZyme
Location: 28765 - 29457 (-)
Type: CAZyme
Location: 28765 - 29457 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
RF32
Family
CAG-977
Genus
CAKQWA01
Species
CAKQWA01 sp934277945
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.