Cluster: HRGMv2_3339_CGC11
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3339
- CGC Family ID: CGCFAM_00418
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3339_24 | HRGMv2_3339_24_1 | 1 | 579 | - | GT2 |
| CAZyme | HRGMv2_3339_24 | HRGMv2_3339_24_2 | 569 | 2065 | - | GT83 |
| TC | HRGMv2_3339_24 | HRGMv2_3339_24_3 | 2200 | 3246 | + | 3.D.2.2.1 |
| TC | HRGMv2_3339_24 | HRGMv2_3339_24_4 | 3250 | 3552 | + | 3.D.2.2.1 |
| TC | HRGMv2_3339_24 | HRGMv2_3339_24_5 | 3557 | 4969 | + | 3.D.2.2.1 |
| TC | HRGMv2_3339_24 | HRGMv2_3339_24_6 | 4973 | 6709 | - | 3.A.1.135.7 |
| TC | HRGMv2_3339_24 | HRGMv2_3339_24_7 | 6709 | 8436 | - | 3.A.1.135.5 |
Gene ID: HRGMv2_3339_24_1
Type: CAZyme
Location: 1 - 579 (-)
Type: CAZyme
Location: 1 - 579 (-)
Gene ID: HRGMv2_3339_24_2
Type: CAZyme
Location: 569 - 2065 (-)
Type: CAZyme
Location: 569 - 2065 (-)
Gene ID: HRGMv2_3339_24_3
Type: TC
Location: 2200 - 3246 (+)
Type: TC
Location: 2200 - 3246 (+)
Gene ID: HRGMv2_3339_24_4
Type: TC
Location: 3250 - 3552 (+)
Type: TC
Location: 3250 - 3552 (+)
Gene ID: HRGMv2_3339_24_5
Type: TC
Location: 3557 - 4969 (+)
Type: TC
Location: 3557 - 4969 (+)
Gene ID: HRGMv2_3339_24_6
Type: TC
Location: 4973 - 6709 (-)
Type: TC
Location: 4973 - 6709 (-)
Gene ID: HRGMv2_3339_24_7
Type: TC
Location: 6709 - 8436 (-)
Type: TC
Location: 6709 - 8436 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
RF32
Family
CAG-977
Genus
CAKQWA01
Species
CAKQWA01 sp934277945
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.