Cluster: HRGMv2_3339_CGC1
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3339
- CGC Family ID: CGCFAM_01954
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3339_1 | HRGMv2_3339_1_21 | 20670 | 21485 | - | 2.A.64.3.2 |
| pfam | HRGMv2_3339_1 | HRGMv2_3339_1_22 | 21478 | 21708 | - | TatA_B_E |
| pfam | HRGMv2_3339_1 | HRGMv2_3339_1_23 | 21711 | 21893 | - | TatA_B_E |
| TC | HRGMv2_3339_1 | HRGMv2_3339_1_24 | 21906 | 22598 | - | 9.B.149.1.11 |
| CAZyme | HRGMv2_3339_1 | HRGMv2_3339_1_25 | 22591 | 23631 | - | GH3 |
Gene ID: HRGMv2_3339_1_21
Type: TC
Location: 20670 - 21485 (-)
Type: TC
Location: 20670 - 21485 (-)
Gene ID: HRGMv2_3339_1_22
Type: pfam
Location: 21478 - 21708 (-)
Type: pfam
Location: 21478 - 21708 (-)
Gene ID: HRGMv2_3339_1_23
Type: pfam
Location: 21711 - 21893 (-)
Type: pfam
Location: 21711 - 21893 (-)
Gene ID: HRGMv2_3339_1_24
Type: TC
Location: 21906 - 22598 (-)
Type: TC
Location: 21906 - 22598 (-)
Gene ID: HRGMv2_3339_1_25
Type: CAZyme
Location: 22591 - 23631 (-)
Type: CAZyme
Location: 22591 - 23631 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
RF32
Family
CAG-977
Genus
CAKQWA01
Species
CAKQWA01 sp934277945
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.