Cluster: HRGMv2_3331_CGC7
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3331
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3331_10 | HRGMv2_3331_10_25 | 29653 | 30228 | - | 4.F.1.1.8 |
| STP | HRGMv2_3331_10 | HRGMv2_3331_10_26 | 30299 | 30721 | - | NUDIX |
| pfam | HRGMv2_3331_10 | HRGMv2_3331_10_27 | 30718 | 32256 | - | AMMECR1 | Memo |
| TC | HRGMv2_3331_10 | HRGMv2_3331_10_28 | 32253 | 33125 | - | 3.A.1.15.5 |
| TC | HRGMv2_3331_10 | HRGMv2_3331_10_29 | 33198 | 33950 | + | 3.A.1.15.5 |
| TC | HRGMv2_3331_10 | HRGMv2_3331_10_30 | 33940 | 34743 | + | 3.A.1.15.5 |
| TC | HRGMv2_3331_10 | HRGMv2_3331_10_31 | 34803 | 35768 | + | 3.A.14.1.2 |
| pfam | HRGMv2_3331_10 | HRGMv2_3331_10_32 | 35963 | 37351 | - | DUF4921 |
| CAZyme | HRGMv2_3331_10 | HRGMv2_3331_10_33 | 37531 | 38757 | + | GT5 |
| STP | HRGMv2_3331_10 | HRGMv2_3331_10_34 | 38887 | 39969 | + | AraC_binding |
| pfam | HRGMv2_3331_10 | HRGMv2_3331_10_35 | 40029 | 40379 | - | TM2 | SHOCT |
| TC | HRGMv2_3331_10 | HRGMv2_3331_10_36 | 40391 | 43756 | - | 2.A.1.42.2 |
| TF | HRGMv2_3331_10 | HRGMv2_3331_10_37 | 43862 | 44548 | - | Trans_reg_C |
| TC | HRGMv2_3331_10 | HRGMv2_3331_10_38 | 44732 | 46090 | + | 3.A.6.3.1 |
Gene ID: HRGMv2_3331_10_25
Type: TC
Location: 29653 - 30228 (-)
Type: TC
Location: 29653 - 30228 (-)
Gene ID: HRGMv2_3331_10_26
Type: STP
Location: 30299 - 30721 (-)
Type: STP
Location: 30299 - 30721 (-)
Gene ID: HRGMv2_3331_10_27
Type: pfam
Location: 30718 - 32256 (-)
Type: pfam
Location: 30718 - 32256 (-)
Gene ID: HRGMv2_3331_10_28
Type: TC
Location: 32253 - 33125 (-)
Type: TC
Location: 32253 - 33125 (-)
Gene ID: HRGMv2_3331_10_29
Type: TC
Location: 33198 - 33950 (+)
Type: TC
Location: 33198 - 33950 (+)
Gene ID: HRGMv2_3331_10_30
Type: TC
Location: 33940 - 34743 (+)
Type: TC
Location: 33940 - 34743 (+)
Gene ID: HRGMv2_3331_10_31
Type: TC
Location: 34803 - 35768 (+)
Type: TC
Location: 34803 - 35768 (+)
Gene ID: HRGMv2_3331_10_32
Type: pfam
Location: 35963 - 37351 (-)
Type: pfam
Location: 35963 - 37351 (-)
Gene ID: HRGMv2_3331_10_33
Type: CAZyme
Location: 37531 - 38757 (+)
Type: CAZyme
Location: 37531 - 38757 (+)
Gene ID: HRGMv2_3331_10_34
Type: STP
Location: 38887 - 39969 (+)
Type: STP
Location: 38887 - 39969 (+)
Gene ID: HRGMv2_3331_10_35
Type: pfam
Location: 40029 - 40379 (-)
Type: pfam
Location: 40029 - 40379 (-)
Gene ID: HRGMv2_3331_10_36
Type: TC
Location: 40391 - 43756 (-)
Type: TC
Location: 40391 - 43756 (-)
Gene ID: HRGMv2_3331_10_37
Type: TF
Location: 43862 - 44548 (-)
Type: TF
Location: 43862 - 44548 (-)
Gene ID: HRGMv2_3331_10_38
Type: TC
Location: 44732 - 46090 (+)
Type: TC
Location: 44732 - 46090 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
RF32
Family
CAG-977
Genus
UBA11549
Species
UBA11549 sp900768185
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.