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Cluster: HRGMv2_3331_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3331_8 HRGMv2_3331_8_43 54208 54615 + 3.A.5.1.1
TC HRGMv2_3331_8 HRGMv2_3331_8_44 54628 56187 + 2.A.6.4.1
TC HRGMv2_3331_8 HRGMv2_3331_8_45 56200 57138 + 2.A.6.4.1
NULL(UNKNOWN) HRGMv2_3331_8 HRGMv2_3331_8_46 57444 57848 - NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_3331_8 HRGMv2_3331_8_47 57947 58450 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3331_8 HRGMv2_3331_8_48 58835 61468 + GH77
pfam HRGMv2_3331_8 HRGMv2_3331_8_49 61590 62489 - 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | NAD_binding_10 | GDP_Man_Dehyd
CAZyme HRGMv2_3331_8 HRGMv2_3331_8_50 62589 63716 + GT4
CAZyme HRGMv2_3331_8 HRGMv2_3331_8_51 63713 64516 + GT32
Gene ID: HRGMv2_3331_8_43
Type: TC
Location: 54208 - 54615 (+)
Gene ID: HRGMv2_3331_8_44
Type: TC
Location: 54628 - 56187 (+)
Gene ID: HRGMv2_3331_8_45
Type: TC
Location: 56200 - 57138 (+)
Gene ID: HRGMv2_3331_8_46
Type:
Location: 57444 - 57848 (-)
Gene ID: HRGMv2_3331_8_47
Type:
Location: 57947 - 58450 (+)
Gene ID: HRGMv2_3331_8_48
Type: CAZyme
Location: 58835 - 61468 (+)
Gene ID: HRGMv2_3331_8_49
Type: pfam
Location: 61590 - 62489 (-)
Gene ID: HRGMv2_3331_8_50
Type: CAZyme
Location: 62589 - 63716 (+)
Gene ID: HRGMv2_3331_8_51
Type: CAZyme
Location: 63713 - 64516 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Pseudomonadota
→
Class
Alphaproteobacteria
→
Order
RF32
→
Family
CAG-977
→
Genus
UBA11549
→
Species
UBA11549 sp900768185

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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