Cluster: HRGMv2_3331_CGC4
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3331
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3331_4 | HRGMv2_3331_4_79 | 80565 | 83033 | - | GT35 |
| NULL(UNKNOWN) | HRGMv2_3331_4 | HRGMv2_3331_4_80 | 83290 | 83631 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_3331_4 | HRGMv2_3331_4_81 | 83711 | 84091 | + | Oxidored_q4 |
| TC | HRGMv2_3331_4 | HRGMv2_3331_4_82 | 84079 | 84519 | + | 3.D.9.1.1 |
| TC | HRGMv2_3331_4 | HRGMv2_3331_4_83 | 84516 | 85034 | + | 3.D.1.2.1 |
| TC | HRGMv2_3331_4 | HRGMv2_3331_4_84 | 85027 | 86178 | + | 3.D.1.2.1 |
| TC | HRGMv2_3331_4 | HRGMv2_3331_4_85 | 86175 | 87851 | + | 3.D.1.6.4 |
Gene ID: HRGMv2_3331_4_79
Type: CAZyme
Location: 80565 - 83033 (-)
Type: CAZyme
Location: 80565 - 83033 (-)
Gene ID: HRGMv2_3331_4_80
Type:
Location: 83290 - 83631 (+)
Type:
Location: 83290 - 83631 (+)
Gene ID: HRGMv2_3331_4_81
Type: pfam
Location: 83711 - 84091 (+)
Type: pfam
Location: 83711 - 84091 (+)
Gene ID: HRGMv2_3331_4_82
Type: TC
Location: 84079 - 84519 (+)
Type: TC
Location: 84079 - 84519 (+)
Gene ID: HRGMv2_3331_4_83
Type: TC
Location: 84516 - 85034 (+)
Type: TC
Location: 84516 - 85034 (+)
Gene ID: HRGMv2_3331_4_84
Type: TC
Location: 85027 - 86178 (+)
Type: TC
Location: 85027 - 86178 (+)
Gene ID: HRGMv2_3331_4_85
Type: TC
Location: 86175 - 87851 (+)
Type: TC
Location: 86175 - 87851 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
RF32
Family
CAG-977
Genus
UBA11549
Species
UBA11549 sp900768185
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.