Cluster: HRGMv2_3331_CGC2
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_3331
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3331_3 | HRGMv2_3331_3_77 | 85263 | 85994 | + | 3.A.6.2.1 |
| TF | HRGMv2_3331_3 | HRGMv2_3331_3_78 | 86571 | 87155 | + | GerE |
| CAZyme | HRGMv2_3331_3 | HRGMv2_3331_3_79 | 87199 | 88008 | + | GT2 |
| CAZyme | HRGMv2_3331_3 | HRGMv2_3331_3_80 | 88008 | 88901 | + | GT92 |
| STP | HRGMv2_3331_3 | HRGMv2_3331_3_81 | 88898 | 89986 | + | Aminotran_1_2 |
| pfam | HRGMv2_3331_3 | HRGMv2_3331_3_82 | 89973 | 90686 | + | DUF1796 |
| CAZyme | HRGMv2_3331_3 | HRGMv2_3331_3_83 | 90679 | 91569 | + | GT2 |
Gene ID: HRGMv2_3331_3_77
Type: TC
Location: 85263 - 85994 (+)
Type: TC
Location: 85263 - 85994 (+)
Gene ID: HRGMv2_3331_3_78
Type: TF
Location: 86571 - 87155 (+)
Type: TF
Location: 86571 - 87155 (+)
Gene ID: HRGMv2_3331_3_79
Type: CAZyme
Location: 87199 - 88008 (+)
Type: CAZyme
Location: 87199 - 88008 (+)
Gene ID: HRGMv2_3331_3_80
Type: CAZyme
Location: 88008 - 88901 (+)
Type: CAZyme
Location: 88008 - 88901 (+)
Gene ID: HRGMv2_3331_3_81
Type: STP
Location: 88898 - 89986 (+)
Type: STP
Location: 88898 - 89986 (+)
Gene ID: HRGMv2_3331_3_82
Type: pfam
Location: 89973 - 90686 (+)
Type: pfam
Location: 89973 - 90686 (+)
Gene ID: HRGMv2_3331_3_83
Type: CAZyme
Location: 90679 - 91569 (+)
Type: CAZyme
Location: 90679 - 91569 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
RF32
Family
CAG-977
Genus
UBA11549
Species
UBA11549 sp900768185
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.