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Cluster: HRGMv2_3330_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3330_15 HRGMv2_3330_15_2 1843 2646 - GT32
CAZyme HRGMv2_3330_15 HRGMv2_3330_15_3 2643 3770 - GT4
pfam HRGMv2_3330_15 HRGMv2_3330_15_4 3869 4768 + 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | NAD_binding_10 | GDP_Man_Dehyd
CAZyme HRGMv2_3330_15 HRGMv2_3330_15_5 4893 7526 - GH77
pfam HRGMv2_3330_15 HRGMv2_3330_15_6 7899 8429 - Ank
NULL(UNKNOWN) HRGMv2_3330_15 HRGMv2_3330_15_7 8534 8938 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3330_15 HRGMv2_3330_15_8 9246 10184 - 2.A.6.4.1
TC HRGMv2_3330_15 HRGMv2_3330_15_9 10197 11756 - 2.A.6.4.1
TC HRGMv2_3330_15 HRGMv2_3330_15_10 11769 12176 - 3.A.5.1.1
Gene ID: HRGMv2_3330_15_2
Type: CAZyme
Location: 1843 - 2646 (-)
Gene ID: HRGMv2_3330_15_3
Type: CAZyme
Location: 2643 - 3770 (-)
Gene ID: HRGMv2_3330_15_4
Type: pfam
Location: 3869 - 4768 (+)
Gene ID: HRGMv2_3330_15_5
Type: CAZyme
Location: 4893 - 7526 (-)
Gene ID: HRGMv2_3330_15_6
Type: pfam
Location: 7899 - 8429 (-)
Gene ID: HRGMv2_3330_15_7
Type:
Location: 8534 - 8938 (+)
Gene ID: HRGMv2_3330_15_8
Type: TC
Location: 9246 - 10184 (-)
Gene ID: HRGMv2_3330_15_9
Type: TC
Location: 10197 - 11756 (-)
Gene ID: HRGMv2_3330_15_10
Type: TC
Location: 11769 - 12176 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Pseudomonadota
→
Class
Alphaproteobacteria
→
Order
RF32
→
Family
CAG-977
→
Genus
UBA11549
→
Species
UBA11549 sp002440235

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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