Cluster: HRGMv2_3330_CGC4
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3330
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3330_4 | HRGMv2_3330_4_58 | 59504 | 61972 | - | GT35 |
| NULL(UNKNOWN) | HRGMv2_3330_4 | HRGMv2_3330_4_59 | 62167 | 62577 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_3330_4 | HRGMv2_3330_4_60 | 62659 | 63039 | + | Oxidored_q4 |
| TC | HRGMv2_3330_4 | HRGMv2_3330_4_61 | 63027 | 63470 | + | 3.D.9.1.1 |
| TC | HRGMv2_3330_4 | HRGMv2_3330_4_62 | 63467 | 63988 | + | 3.D.1.2.1 |
| TC | HRGMv2_3330_4 | HRGMv2_3330_4_63 | 63981 | 65132 | + | 3.D.1.2.1 |
| TC | HRGMv2_3330_4 | HRGMv2_3330_4_64 | 65129 | 66805 | + | 3.D.1.6.4 |
Gene ID: HRGMv2_3330_4_58
Type: CAZyme
Location: 59504 - 61972 (-)
Type: CAZyme
Location: 59504 - 61972 (-)
Gene ID: HRGMv2_3330_4_59
Type:
Location: 62167 - 62577 (+)
Type:
Location: 62167 - 62577 (+)
Gene ID: HRGMv2_3330_4_60
Type: pfam
Location: 62659 - 63039 (+)
Type: pfam
Location: 62659 - 63039 (+)
Gene ID: HRGMv2_3330_4_61
Type: TC
Location: 63027 - 63470 (+)
Type: TC
Location: 63027 - 63470 (+)
Gene ID: HRGMv2_3330_4_62
Type: TC
Location: 63467 - 63988 (+)
Type: TC
Location: 63467 - 63988 (+)
Gene ID: HRGMv2_3330_4_63
Type: TC
Location: 63981 - 65132 (+)
Type: TC
Location: 63981 - 65132 (+)
Gene ID: HRGMv2_3330_4_64
Type: TC
Location: 65129 - 66805 (+)
Type: TC
Location: 65129 - 66805 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
RF32
Family
CAG-977
Genus
UBA11549
Species
UBA11549 sp002440235
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.