Cluster: HRGMv2_3330_CGC3
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3330
- CGC Family ID: CGCFAM_06217
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3330_2 | HRGMv2_3330_2_115 | 113082 | 113981 | - | GT2 |
| pfam | HRGMv2_3330_2 | HRGMv2_3330_2_116 | 114149 | 115030 | + | tRNA-synt_2e |
| pfam | HRGMv2_3330_2 | HRGMv2_3330_2_117 | 115035 | 117188 | + | tRNA_synt_2f | DALR_1 |
| TC | HRGMv2_3330_2 | HRGMv2_3330_2_118 | 117206 | 119884 | + | 4.A.2.1.17 |
| NULL(UNKNOWN) | HRGMv2_3330_2 | HRGMv2_3330_2_119 | 120003 | 120650 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3330_2 | HRGMv2_3330_2_120 | 120952 | 121683 | - | 3.A.6.2.1 |
Gene ID: HRGMv2_3330_2_115
Type: CAZyme
Location: 113082 - 113981 (-)
Type: CAZyme
Location: 113082 - 113981 (-)
Gene ID: HRGMv2_3330_2_116
Type: pfam
Location: 114149 - 115030 (+)
Type: pfam
Location: 114149 - 115030 (+)
Gene ID: HRGMv2_3330_2_117
Type: pfam
Location: 115035 - 117188 (+)
Type: pfam
Location: 115035 - 117188 (+)
Gene ID: HRGMv2_3330_2_118
Type: TC
Location: 117206 - 119884 (+)
Type: TC
Location: 117206 - 119884 (+)
Gene ID: HRGMv2_3330_2_119
Type:
Location: 120003 - 120650 (-)
Type:
Location: 120003 - 120650 (-)
Gene ID: HRGMv2_3330_2_120
Type: TC
Location: 120952 - 121683 (-)
Type: TC
Location: 120952 - 121683 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
RF32
Family
CAG-977
Genus
UBA11549
Species
UBA11549 sp002440235
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.