Cluster: HRGMv2_3330_CGC1
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3330
- CGC Family ID: CGCFAM_03761
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3330_1 | HRGMv2_3330_1_21 | 21526 | 22584 | + | 2.A.86.1.5 |
| TC | HRGMv2_3330_1 | HRGMv2_3330_1_22 | 22586 | 23278 | + | 2.A.86.1.5 |
| CAZyme | HRGMv2_3330_1 | HRGMv2_3330_1_23 | 23275 | 24336 | + | GT2 |
| pfam | HRGMv2_3330_1 | HRGMv2_3330_1_24 | 24422 | 25732 | + | tRNA-synt_2b | HGTP_anticodon |
| TC | HRGMv2_3330_1 | HRGMv2_3330_1_25 | 25758 | 27008 | + | 3.A.1.125.1 |
| TC | HRGMv2_3330_1 | HRGMv2_3330_1_26 | 27001 | 27762 | + | 3.A.1.125.1 |
Gene ID: HRGMv2_3330_1_21
Type: TC
Location: 21526 - 22584 (+)
Type: TC
Location: 21526 - 22584 (+)
Gene ID: HRGMv2_3330_1_22
Type: TC
Location: 22586 - 23278 (+)
Type: TC
Location: 22586 - 23278 (+)
Gene ID: HRGMv2_3330_1_23
Type: CAZyme
Location: 23275 - 24336 (+)
Type: CAZyme
Location: 23275 - 24336 (+)
Gene ID: HRGMv2_3330_1_24
Type: pfam
Location: 24422 - 25732 (+)
Type: pfam
Location: 24422 - 25732 (+)
Gene ID: HRGMv2_3330_1_25
Type: TC
Location: 25758 - 27008 (+)
Type: TC
Location: 25758 - 27008 (+)
Gene ID: HRGMv2_3330_1_26
Type: TC
Location: 27001 - 27762 (+)
Type: TC
Location: 27001 - 27762 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
RF32
Family
CAG-977
Genus
UBA11549
Species
UBA11549 sp002440235
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.