Cluster: HRGMv2_3329_CGC7
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3329
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3329_16 | HRGMv2_3329_16_24 | 22901 | 24784 | - | 3.A.1.132.4 |
| TC | HRGMv2_3329_16 | HRGMv2_3329_16_25 | 24786 | 25520 | - | 3.A.1.132.4 |
| TC | HRGMv2_3329_16 | HRGMv2_3329_16_26 | 25517 | 26476 | - | 3.A.1.132.4 |
| pfam | HRGMv2_3329_16 | HRGMv2_3329_16_27 | 26647 | 27495 | + | EipB_like |
| pfam | HRGMv2_3329_16 | HRGMv2_3329_16_28 | 27556 | 28431 | + | Hydrolase | Hydrolase_like | Hydrolase_6 |
| CAZyme | HRGMv2_3329_16 | HRGMv2_3329_16_29 | 28785 | 31253 | - | GT35 |
| NULL(UNKNOWN) | HRGMv2_3329_16 | HRGMv2_3329_16_30 | 31500 | 31841 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_3329_16 | HRGMv2_3329_16_31 | 31902 | 32282 | + | Oxidored_q4 |
| TC | HRGMv2_3329_16 | HRGMv2_3329_16_32 | 32273 | 32734 | + | 3.D.1.2.1 |
| TC | HRGMv2_3329_16 | HRGMv2_3329_16_33 | 32737 | 33309 | + | 3.D.1.6.4 |
| TC | HRGMv2_3329_16 | HRGMv2_3329_16_34 | 33306 | 34466 | + | 3.D.1.6.4 |
| TC | HRGMv2_3329_16 | HRGMv2_3329_16_35 | 34463 | 36172 | + | 3.D.1.6.3 |
Gene ID: HRGMv2_3329_16_24
Type: TC
Location: 22901 - 24784 (-)
Type: TC
Location: 22901 - 24784 (-)
Gene ID: HRGMv2_3329_16_25
Type: TC
Location: 24786 - 25520 (-)
Type: TC
Location: 24786 - 25520 (-)
Gene ID: HRGMv2_3329_16_26
Type: TC
Location: 25517 - 26476 (-)
Type: TC
Location: 25517 - 26476 (-)
Gene ID: HRGMv2_3329_16_27
Type: pfam
Location: 26647 - 27495 (+)
Type: pfam
Location: 26647 - 27495 (+)
Gene ID: HRGMv2_3329_16_28
Type: pfam
Location: 27556 - 28431 (+)
Type: pfam
Location: 27556 - 28431 (+)
Gene ID: HRGMv2_3329_16_29
Type: CAZyme
Location: 28785 - 31253 (-)
Type: CAZyme
Location: 28785 - 31253 (-)
Gene ID: HRGMv2_3329_16_30
Type:
Location: 31500 - 31841 (+)
Type:
Location: 31500 - 31841 (+)
Gene ID: HRGMv2_3329_16_31
Type: pfam
Location: 31902 - 32282 (+)
Type: pfam
Location: 31902 - 32282 (+)
Gene ID: HRGMv2_3329_16_32
Type: TC
Location: 32273 - 32734 (+)
Type: TC
Location: 32273 - 32734 (+)
Gene ID: HRGMv2_3329_16_33
Type: TC
Location: 32737 - 33309 (+)
Type: TC
Location: 32737 - 33309 (+)
Gene ID: HRGMv2_3329_16_34
Type: TC
Location: 33306 - 34466 (+)
Type: TC
Location: 33306 - 34466 (+)
Gene ID: HRGMv2_3329_16_35
Type: TC
Location: 34463 - 36172 (+)
Type: TC
Location: 34463 - 36172 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
RF32
Family
CAG-977
Genus
UBA11549
Species
UBA11549 sp902777205
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.