Cluster: HRGMv2_3329_CGC4
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_3329
- CGC Family ID: CGCFAM_06217
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3329_7 | HRGMv2_3329_7_61 | 54478 | 57156 | - | 4.A.2.1.17 |
| pfam | HRGMv2_3329_7 | HRGMv2_3329_7_62 | 57174 | 59327 | - | tRNA_synt_2f | DALR_1 |
| pfam | HRGMv2_3329_7 | HRGMv2_3329_7_63 | 59332 | 60213 | - | tRNA-synt_2e |
| CAZyme | HRGMv2_3329_7 | HRGMv2_3329_7_64 | 60384 | 61292 | + | GT2 |
| CAZyme | HRGMv2_3329_7 | HRGMv2_3329_7_65 | 61435 | 62292 | + | GT2 |
| pfam | HRGMv2_3329_7 | HRGMv2_3329_7_66 | 62289 | 63299 | + | Glyco_transf_10 |
| CAZyme | HRGMv2_3329_7 | HRGMv2_3329_7_67 | 63296 | 64900 | + | GT2 |
Gene ID: HRGMv2_3329_7_61
Type: TC
Location: 54478 - 57156 (-)
Type: TC
Location: 54478 - 57156 (-)
Gene ID: HRGMv2_3329_7_62
Type: pfam
Location: 57174 - 59327 (-)
Type: pfam
Location: 57174 - 59327 (-)
Gene ID: HRGMv2_3329_7_63
Type: pfam
Location: 59332 - 60213 (-)
Type: pfam
Location: 59332 - 60213 (-)
Gene ID: HRGMv2_3329_7_64
Type: CAZyme
Location: 60384 - 61292 (+)
Type: CAZyme
Location: 60384 - 61292 (+)
Gene ID: HRGMv2_3329_7_65
Type: CAZyme
Location: 61435 - 62292 (+)
Type: CAZyme
Location: 61435 - 62292 (+)
Gene ID: HRGMv2_3329_7_66
Type: pfam
Location: 62289 - 63299 (+)
Type: pfam
Location: 62289 - 63299 (+)
Gene ID: HRGMv2_3329_7_67
Type: CAZyme
Location: 63296 - 64900 (+)
Type: CAZyme
Location: 63296 - 64900 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
RF32
Family
CAG-977
Genus
UBA11549
Species
UBA11549 sp902777205
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.