Cluster: HRGMv2_3329_CGC3
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_3329
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3329_3 | HRGMv2_3329_3_1 | 49 | 1044 | + | GT2 |
| pfam | HRGMv2_3329_3 | HRGMv2_3329_3_2 | 1034 | 1438 | + | FdtA |
| pfam | HRGMv2_3329_3 | HRGMv2_3329_3_3 | 1435 | 1881 | + | Hexapep | Hexapep | Hexapep_2 |
| CAZyme | HRGMv2_3329_3 | HRGMv2_3329_3_4 | 1894 | 2916 | + | GT2 |
| pfam | HRGMv2_3329_3 | HRGMv2_3329_3_5 | 2933 | 3775 | + | Epimerase | GDP_Man_Dehyd |
| CAZyme | HRGMv2_3329_3 | HRGMv2_3329_3_6 | 3768 | 5405 | + | GT2 |
| NULL(UNKNOWN) | HRGMv2_3329_3 | HRGMv2_3329_3_7 | 5735 | 5902 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_3329_3 | HRGMv2_3329_3_8 | 5952 | 6818 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3329_3 | HRGMv2_3329_3_9 | 6915 | 8351 | - | 2.A.66.1.27 |
| pfam | HRGMv2_3329_3 | HRGMv2_3329_3_10 | 8341 | 8748 | - | ATP-synt_DE_N |
| TC | HRGMv2_3329_3 | HRGMv2_3329_3_11 | 8748 | 10205 | - | 3.A.2.1.7 |
| TC | HRGMv2_3329_3 | HRGMv2_3329_3_12 | 10229 | 11371 | - | 3.A.2.1.7 |
| TC | HRGMv2_3329_3 | HRGMv2_3329_3_13 | 11388 | 12920 | - | 3.A.2.1.7 |
| TC | HRGMv2_3329_3 | HRGMv2_3329_3_14 | 12917 | 13477 | - | 3.A.2.1.4 |
Gene ID: HRGMv2_3329_3_1
Type: CAZyme
Location: 49 - 1044 (+)
Type: CAZyme
Location: 49 - 1044 (+)
Gene ID: HRGMv2_3329_3_2
Type: pfam
Location: 1034 - 1438 (+)
Type: pfam
Location: 1034 - 1438 (+)
Gene ID: HRGMv2_3329_3_3
Type: pfam
Location: 1435 - 1881 (+)
Type: pfam
Location: 1435 - 1881 (+)
Gene ID: HRGMv2_3329_3_4
Type: CAZyme
Location: 1894 - 2916 (+)
Type: CAZyme
Location: 1894 - 2916 (+)
Gene ID: HRGMv2_3329_3_5
Type: pfam
Location: 2933 - 3775 (+)
Type: pfam
Location: 2933 - 3775 (+)
Gene ID: HRGMv2_3329_3_6
Type: CAZyme
Location: 3768 - 5405 (+)
Type: CAZyme
Location: 3768 - 5405 (+)
Gene ID: HRGMv2_3329_3_7
Type:
Location: 5735 - 5902 (+)
Type:
Location: 5735 - 5902 (+)
Gene ID: HRGMv2_3329_3_8
Type:
Location: 5952 - 6818 (-)
Type:
Location: 5952 - 6818 (-)
Gene ID: HRGMv2_3329_3_9
Type: TC
Location: 6915 - 8351 (-)
Type: TC
Location: 6915 - 8351 (-)
Gene ID: HRGMv2_3329_3_10
Type: pfam
Location: 8341 - 8748 (-)
Type: pfam
Location: 8341 - 8748 (-)
Gene ID: HRGMv2_3329_3_11
Type: TC
Location: 8748 - 10205 (-)
Type: TC
Location: 8748 - 10205 (-)
Gene ID: HRGMv2_3329_3_12
Type: TC
Location: 10229 - 11371 (-)
Type: TC
Location: 10229 - 11371 (-)
Gene ID: HRGMv2_3329_3_13
Type: TC
Location: 11388 - 12920 (-)
Type: TC
Location: 11388 - 12920 (-)
Gene ID: HRGMv2_3329_3_14
Type: TC
Location: 12917 - 13477 (-)
Type: TC
Location: 12917 - 13477 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
RF32
Family
CAG-977
Genus
UBA11549
Species
UBA11549 sp902777205
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.