Cluster: HRGMv2_3329_CGC2
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_3329
- CGC Family ID: CGCFAM_03761
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3329_1 | HRGMv2_3329_1_175 | 199531 | 200289 | - | 3.A.1.125.1 |
| TC | HRGMv2_3329_1 | HRGMv2_3329_1_176 | 200282 | 201532 | - | 3.A.1.125.1 |
| pfam | HRGMv2_3329_1 | HRGMv2_3329_1_177 | 201543 | 202856 | - | tRNA-synt_2b | HGTP_anticodon |
| CAZyme | HRGMv2_3329_1 | HRGMv2_3329_1_178 | 202969 | 204006 | - | GT2 |
| pfam | HRGMv2_3329_1 | HRGMv2_3329_1_179 | 204054 | 205676 | - | Sulfatase |
| CAZyme | HRGMv2_3329_1 | HRGMv2_3329_1_180 | 205673 | 206476 | - | GT32 |
| CAZyme | HRGMv2_3329_1 | HRGMv2_3329_1_181 | 206473 | 207600 | - | GT4 |
Gene ID: HRGMv2_3329_1_175
Type: TC
Location: 199531 - 200289 (-)
Type: TC
Location: 199531 - 200289 (-)
Gene ID: HRGMv2_3329_1_176
Type: TC
Location: 200282 - 201532 (-)
Type: TC
Location: 200282 - 201532 (-)
Gene ID: HRGMv2_3329_1_177
Type: pfam
Location: 201543 - 202856 (-)
Type: pfam
Location: 201543 - 202856 (-)
Gene ID: HRGMv2_3329_1_178
Type: CAZyme
Location: 202969 - 204006 (-)
Type: CAZyme
Location: 202969 - 204006 (-)
Gene ID: HRGMv2_3329_1_179
Type: pfam
Location: 204054 - 205676 (-)
Type: pfam
Location: 204054 - 205676 (-)
Gene ID: HRGMv2_3329_1_180
Type: CAZyme
Location: 205673 - 206476 (-)
Type: CAZyme
Location: 205673 - 206476 (-)
Gene ID: HRGMv2_3329_1_181
Type: CAZyme
Location: 206473 - 207600 (-)
Type: CAZyme
Location: 206473 - 207600 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
RF32
Family
CAG-977
Genus
UBA11549
Species
UBA11549 sp902777205
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.