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Cluster: HRGMv2_3326_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3326_9 HRGMv2_3326_9_39 51325 51864 + 2.A.51.1.6
TC HRGMv2_3326_9 HRGMv2_3326_9_40 51861 52400 + 2.A.51.1.6
STP HRGMv2_3326_9 HRGMv2_3326_9_41 52735 53328 - HTH_7
CAZyme HRGMv2_3326_9 HRGMv2_3326_9_42 53565 54758 + GT2
CAZyme HRGMv2_3326_9 HRGMv2_3326_9_43 54755 55888 + GT8
CAZyme HRGMv2_3326_9 HRGMv2_3326_9_44 55888 57045 + GT4
pfam HRGMv2_3326_9 HRGMv2_3326_9_45 57120 57992 + VIT1
pfam HRGMv2_3326_9 HRGMv2_3326_9_46 58007 58717 - Pirin | Pirin_C_2
TC HRGMv2_3326_9 HRGMv2_3326_9_47 58837 59712 + 2.A.4.1.5
Gene ID: HRGMv2_3326_9_39
Type: TC
Location: 51325 - 51864 (+)
Gene ID: HRGMv2_3326_9_40
Type: TC
Location: 51861 - 52400 (+)
Gene ID: HRGMv2_3326_9_41
Type: STP
Location: 52735 - 53328 (-)
Gene ID: HRGMv2_3326_9_42
Type: CAZyme
Location: 53565 - 54758 (+)
Gene ID: HRGMv2_3326_9_43
Type: CAZyme
Location: 54755 - 55888 (+)
Gene ID: HRGMv2_3326_9_44
Type: CAZyme
Location: 55888 - 57045 (+)
Gene ID: HRGMv2_3326_9_45
Type: pfam
Location: 57120 - 57992 (+)
Gene ID: HRGMv2_3326_9_46
Type: pfam
Location: 58007 - 58717 (-)
Gene ID: HRGMv2_3326_9_47
Type: TC
Location: 58837 - 59712 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Pseudomonadota
→
Class
Alphaproteobacteria
→
Order
RF32
→
Family
UBA3637
→
Genus
CALXXA01
→
Species
CALXXA01 sp944391545

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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