Cluster: HRGMv2_3324_CGC4
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3324
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3324_1 | HRGMv2_3324_1_111 | 109867 | 111231 | - | 2.A.66.1.2 |
| pfam | HRGMv2_3324_1 | HRGMv2_3324_1_112 | 111224 | 112285 | - | Radical_SAM | BATS |
| CAZyme | HRGMv2_3324_1 | HRGMv2_3324_1_113 | 112559 | 115186 | + | GH77 |
| TC | HRGMv2_3324_1 | HRGMv2_3324_1_114 | 115344 | 117098 | + | 2.A.53.3.11 |
| NULL(UNKNOWN) | HRGMv2_3324_1 | HRGMv2_3324_1_115 | 117165 | 117701 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_3324_1 | HRGMv2_3324_1_116 | 117706 | 118287 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3324_1 | HRGMv2_3324_1_117 | 118444 | 121074 | + | 3.A.16.1.3 |
| pfam | HRGMv2_3324_1 | HRGMv2_3324_1_118 | 121163 | 123046 | - | Rotamase | Rotamase | Rotamase_2 | Rotamase_2 | Rotamase_3 | SurA_N_2 | SurA_N_3 |
| pfam | HRGMv2_3324_1 | HRGMv2_3324_1_119 | 123247 | 124008 | + | TIM |
| TC | HRGMv2_3324_1 | HRGMv2_3324_1_120 | 124050 | 124358 | + | 3.A.5.1.1 |
Gene ID: HRGMv2_3324_1_111
Type: TC
Location: 109867 - 111231 (-)
Type: TC
Location: 109867 - 111231 (-)
Gene ID: HRGMv2_3324_1_112
Type: pfam
Location: 111224 - 112285 (-)
Type: pfam
Location: 111224 - 112285 (-)
Gene ID: HRGMv2_3324_1_113
Type: CAZyme
Location: 112559 - 115186 (+)
Type: CAZyme
Location: 112559 - 115186 (+)
Gene ID: HRGMv2_3324_1_114
Type: TC
Location: 115344 - 117098 (+)
Type: TC
Location: 115344 - 117098 (+)
Gene ID: HRGMv2_3324_1_115
Type:
Location: 117165 - 117701 (+)
Type:
Location: 117165 - 117701 (+)
Gene ID: HRGMv2_3324_1_116
Type:
Location: 117706 - 118287 (+)
Type:
Location: 117706 - 118287 (+)
Gene ID: HRGMv2_3324_1_117
Type: TC
Location: 118444 - 121074 (+)
Type: TC
Location: 118444 - 121074 (+)
Gene ID: HRGMv2_3324_1_118
Type: pfam
Location: 121163 - 123046 (-)
Type: pfam
Location: 121163 - 123046 (-)
Gene ID: HRGMv2_3324_1_119
Type: pfam
Location: 123247 - 124008 (+)
Type: pfam
Location: 123247 - 124008 (+)
Gene ID: HRGMv2_3324_1_120
Type: TC
Location: 124050 - 124358 (+)
Type: TC
Location: 124050 - 124358 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
RF32
Family
CAG-239
Genus
CAJLXD01
Species
CAJLXD01 sp902494875
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.