Cluster: HRGMv2_3324_CGC3
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3324
- CGC Family ID: CGCFAM_09747
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3324_1 | HRGMv2_3324_1_51 | 54701 | 55738 | - | 9.A.40.2.2 |
| pfam | HRGMv2_3324_1 | HRGMv2_3324_1_52 | 55847 | 56500 | + | HAD |
| pfam | HRGMv2_3324_1 | HRGMv2_3324_1_53 | 56502 | 57575 | + | Fe-ADH | Fe-ADH_2 |
| CAZyme | HRGMv2_3324_1 | HRGMv2_3324_1_54 | 57664 | 58446 | + | GT2 |
| NULL(UNKNOWN) | HRGMv2_3324_1 | HRGMv2_3324_1_55 | 58524 | 59843 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_3324_1 | HRGMv2_3324_1_56 | 59940 | 60446 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3324_1 | HRGMv2_3324_1_57 | 60503 | 61837 | - | 3.A.18.1.1 |
Gene ID: HRGMv2_3324_1_51
Type: TC
Location: 54701 - 55738 (-)
Type: TC
Location: 54701 - 55738 (-)
Gene ID: HRGMv2_3324_1_52
Type: pfam
Location: 55847 - 56500 (+)
Type: pfam
Location: 55847 - 56500 (+)
Gene ID: HRGMv2_3324_1_53
Type: pfam
Location: 56502 - 57575 (+)
Type: pfam
Location: 56502 - 57575 (+)
Gene ID: HRGMv2_3324_1_54
Type: CAZyme
Location: 57664 - 58446 (+)
Type: CAZyme
Location: 57664 - 58446 (+)
Gene ID: HRGMv2_3324_1_55
Type:
Location: 58524 - 59843 (+)
Type:
Location: 58524 - 59843 (+)
Gene ID: HRGMv2_3324_1_56
Type:
Location: 59940 - 60446 (+)
Type:
Location: 59940 - 60446 (+)
Gene ID: HRGMv2_3324_1_57
Type: TC
Location: 60503 - 61837 (-)
Type: TC
Location: 60503 - 61837 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
RF32
Family
CAG-239
Genus
CAJLXD01
Species
CAJLXD01 sp902494875
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.