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Cluster: HRGMv2_3324_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3324_10 HRGMv2_3324_10_4 2107 3342 - GH13_20
STP HRGMv2_3324_10 HRGMv2_3324_10_5 3391 3966 - TetR_N
pfam HRGMv2_3324_10 HRGMv2_3324_10_6 4064 5836 - Sulfatase
TC HRGMv2_3324_10 HRGMv2_3324_10_7 6058 7398 - 2.A.66.1.28
pfam HRGMv2_3324_10 HRGMv2_3324_10_8 7561 8886 + Ubie_methyltran | MTS | Methyltransf_11 | Methyltransf_12 | Methyltransf_16 | TPR_8 | TPR_8 | TPR_11 | TPR_16 | TPR_16 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31 | TPR_19
pfam HRGMv2_3324_10 HRGMv2_3324_10_9 8936 9172 - DUF2934
CAZyme HRGMv2_3324_10 HRGMv2_3324_10_10 9448 11646 + CBM48 | GH13_9
CAZyme HRGMv2_3324_10 HRGMv2_3324_10_11 11674 13752 + GH13_11
CAZyme HRGMv2_3324_10 HRGMv2_3324_10_12 13767 15917 + GH77
Gene ID: HRGMv2_3324_10_4
Type: CAZyme
Location: 2107 - 3342 (-)
Gene ID: HRGMv2_3324_10_5
Type: STP
Location: 3391 - 3966 (-)
Gene ID: HRGMv2_3324_10_6
Type: pfam
Location: 4064 - 5836 (-)
Gene ID: HRGMv2_3324_10_7
Type: TC
Location: 6058 - 7398 (-)
Gene ID: HRGMv2_3324_10_8
Type: pfam
Location: 7561 - 8886 (+)
Gene ID: HRGMv2_3324_10_9
Type: pfam
Location: 8936 - 9172 (-)
Gene ID: HRGMv2_3324_10_10
Type: CAZyme
Location: 9448 - 11646 (+)
Gene ID: HRGMv2_3324_10_11
Type: CAZyme
Location: 11674 - 13752 (+)
Gene ID: HRGMv2_3324_10_12
Type: CAZyme
Location: 13767 - 15917 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Pseudomonadota
→
Class
Alphaproteobacteria
→
Order
RF32
→
Family
CAG-239
→
Genus
CAJLXD01
→
Species
CAJLXD01 sp902494875

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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