Cluster: HRGMv2_3318_CGC8
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3318
- CGC Family ID: CGCFAM_07468
- Continent: North America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3318_27 | HRGMv2_3318_27_11 | 10372 | 12714 | + | 3.A.12.1.2 |
| NULL(UNKNOWN) | HRGMv2_3318_27 | HRGMv2_3318_27_12 | 13039 | 13581 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_3318_27 | HRGMv2_3318_27_13 | 13636 | 14244 | - | GrpE |
| CAZyme | HRGMv2_3318_27 | HRGMv2_3318_27_14 | 14365 | 16401 | + | GT5 |
Gene ID: HRGMv2_3318_27_11
Type: TC
Location: 10372 - 12714 (+)
Type: TC
Location: 10372 - 12714 (+)
Gene ID: HRGMv2_3318_27_12
Type:
Location: 13039 - 13581 (+)
Type:
Location: 13039 - 13581 (+)
Gene ID: HRGMv2_3318_27_13
Type: pfam
Location: 13636 - 14244 (-)
Type: pfam
Location: 13636 - 14244 (-)
Gene ID: HRGMv2_3318_27_14
Type: CAZyme
Location: 14365 - 16401 (+)
Type: CAZyme
Location: 14365 - 16401 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
RF32
Family
CAG-239
Genus
HGM16780
Species
HGM16780 sp030536665
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.