Cluster: HRGMv2_3318_CGC7
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3318
- CGC Family ID: CGCFAM_02843
- Continent: North America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3318_25 | HRGMv2_3318_25_10 | 9117 | 11315 | + | 3.A.7.4.2 |
| pfam | HRGMv2_3318_25 | HRGMv2_3318_25_11 | 11493 | 12926 | - | tRNA-synt_1c | Anticodon_2 |
| pfam | HRGMv2_3318_25 | HRGMv2_3318_25_12 | 13046 | 14710 | - | SMC_N | AAA_23 |
| TC | HRGMv2_3318_25 | HRGMv2_3318_25_13 | 14718 | 15464 | - | 1.B.33.1.4 |
| CAZyme | HRGMv2_3318_25 | HRGMv2_3318_25_14 | 15475 | 16323 | - | CE11 |
Gene ID: HRGMv2_3318_25_10
Type: TC
Location: 9117 - 11315 (+)
Type: TC
Location: 9117 - 11315 (+)
Gene ID: HRGMv2_3318_25_11
Type: pfam
Location: 11493 - 12926 (-)
Type: pfam
Location: 11493 - 12926 (-)
Gene ID: HRGMv2_3318_25_12
Type: pfam
Location: 13046 - 14710 (-)
Type: pfam
Location: 13046 - 14710 (-)
Gene ID: HRGMv2_3318_25_13
Type: TC
Location: 14718 - 15464 (-)
Type: TC
Location: 14718 - 15464 (-)
Gene ID: HRGMv2_3318_25_14
Type: CAZyme
Location: 15475 - 16323 (-)
Type: CAZyme
Location: 15475 - 16323 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
RF32
Family
CAG-239
Genus
HGM16780
Species
HGM16780 sp030536665
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.