Cluster: HRGMv2_3318_CGC6
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3318
- CGC Family ID: CGCFAM_10359
- Continent: North America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3318_13 | HRGMv2_3318_13_10 | 8331 | 9329 | + | 1.A.35.4.1 |
| TC | HRGMv2_3318_13 | HRGMv2_3318_13_11 | 9326 | 10549 | - | 9.B.156.3.1 |
| NULL(UNKNOWN) | HRGMv2_3318_13 | HRGMv2_3318_13_12 | 10558 | 11655 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_3318_13 | HRGMv2_3318_13_13 | 11825 | 12295 | + | AhpC-TSA |
| TC | HRGMv2_3318_13 | HRGMv2_3318_13_14 | 12292 | 14046 | - | 3.A.1.210.11 |
| pfam | HRGMv2_3318_13 | HRGMv2_3318_13_15 | 14190 | 15131 | + | Ldh_1_N | Ldh_1_C |
| CAZyme | HRGMv2_3318_13 | HRGMv2_3318_13_16 | 15128 | 15877 | - | GT2 |
Gene ID: HRGMv2_3318_13_10
Type: TC
Location: 8331 - 9329 (+)
Type: TC
Location: 8331 - 9329 (+)
Gene ID: HRGMv2_3318_13_11
Type: TC
Location: 9326 - 10549 (-)
Type: TC
Location: 9326 - 10549 (-)
Gene ID: HRGMv2_3318_13_12
Type:
Location: 10558 - 11655 (-)
Type:
Location: 10558 - 11655 (-)
Gene ID: HRGMv2_3318_13_13
Type: pfam
Location: 11825 - 12295 (+)
Type: pfam
Location: 11825 - 12295 (+)
Gene ID: HRGMv2_3318_13_14
Type: TC
Location: 12292 - 14046 (-)
Type: TC
Location: 12292 - 14046 (-)
Gene ID: HRGMv2_3318_13_15
Type: pfam
Location: 14190 - 15131 (+)
Type: pfam
Location: 14190 - 15131 (+)
Gene ID: HRGMv2_3318_13_16
Type: CAZyme
Location: 15128 - 15877 (-)
Type: CAZyme
Location: 15128 - 15877 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
RF32
Family
CAG-239
Genus
HGM16780
Species
HGM16780 sp030536665
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.