Cluster: HRGMv2_3318_CGC5
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_3318
- CGC Family ID: CGCFAM_08883
- Continent: North America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3318_11 | HRGMv2_3318_11_6 | 4412 | 5572 | + | 9.B.8.2.2 |
| NULL(UNKNOWN) | HRGMv2_3318_11 | HRGMv2_3318_11_7 | 5576 | 6025 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3318_11 | HRGMv2_3318_11_8 | 6095 | 7162 | + | GT2 |
| CAZyme | HRGMv2_3318_11 | HRGMv2_3318_11_9 | 7246 | 8226 | + | GT2 |
| CAZyme | HRGMv2_3318_11 | HRGMv2_3318_11_10 | 8384 | 9367 | + | GT2 |
Gene ID: HRGMv2_3318_11_6
Type: TC
Location: 4412 - 5572 (+)
Type: TC
Location: 4412 - 5572 (+)
Gene ID: HRGMv2_3318_11_7
Type:
Location: 5576 - 6025 (+)
Type:
Location: 5576 - 6025 (+)
Gene ID: HRGMv2_3318_11_8
Type: CAZyme
Location: 6095 - 7162 (+)
Type: CAZyme
Location: 6095 - 7162 (+)
Gene ID: HRGMv2_3318_11_9
Type: CAZyme
Location: 7246 - 8226 (+)
Type: CAZyme
Location: 7246 - 8226 (+)
Gene ID: HRGMv2_3318_11_10
Type: CAZyme
Location: 8384 - 9367 (+)
Type: CAZyme
Location: 8384 - 9367 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
RF32
Family
CAG-239
Genus
HGM16780
Species
HGM16780 sp030536665
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.