Cluster: HRGMv2_3318_CGC3
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3318
- CGC Family ID: CGCFAM_00326
- Continent: North America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3318_7 | HRGMv2_3318_7_15 | 15896 | 16660 | - | 3.A.1.27.3 |
| TC | HRGMv2_3318_7 | HRGMv2_3318_7_16 | 16657 | 17769 | - | 3.A.1.27.1 |
| NULL(UNKNOWN) | HRGMv2_3318_7 | HRGMv2_3318_7_17 | 17862 | 19373 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_3318_7 | HRGMv2_3318_7_18 | 19523 | 19894 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3318_7 | HRGMv2_3318_7_19 | 19955 | 20932 | - | 8.A.21.2.2 |
| pfam | HRGMv2_3318_7 | HRGMv2_3318_7_20 | 20934 | 21374 | - | NfeD |
| CAZyme | HRGMv2_3318_7 | HRGMv2_3318_7_21 | 21444 | 23756 | - | GT51 |
Gene ID: HRGMv2_3318_7_15
Type: TC
Location: 15896 - 16660 (-)
Type: TC
Location: 15896 - 16660 (-)
Gene ID: HRGMv2_3318_7_16
Type: TC
Location: 16657 - 17769 (-)
Type: TC
Location: 16657 - 17769 (-)
Gene ID: HRGMv2_3318_7_17
Type:
Location: 17862 - 19373 (-)
Type:
Location: 17862 - 19373 (-)
Gene ID: HRGMv2_3318_7_18
Type:
Location: 19523 - 19894 (+)
Type:
Location: 19523 - 19894 (+)
Gene ID: HRGMv2_3318_7_19
Type: TC
Location: 19955 - 20932 (-)
Type: TC
Location: 19955 - 20932 (-)
Gene ID: HRGMv2_3318_7_20
Type: pfam
Location: 20934 - 21374 (-)
Type: pfam
Location: 20934 - 21374 (-)
Gene ID: HRGMv2_3318_7_21
Type: CAZyme
Location: 21444 - 23756 (-)
Type: CAZyme
Location: 21444 - 23756 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
RF32
Family
CAG-239
Genus
HGM16780
Species
HGM16780 sp030536665
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.