Cluster: HRGMv2_3318_CGC2
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3318
- CGC Family ID: CGCFAM_02201
- Continent: North America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3318_4 | HRGMv2_3318_4_8 | 9414 | 10139 | - | 3.A.1.132.4 |
| TC | HRGMv2_3318_4 | HRGMv2_3318_4_9 | 10120 | 10860 | - | 3.A.1.132.4 |
| TC | HRGMv2_3318_4 | HRGMv2_3318_4_10 | 11033 | 11518 | + | 3.A.1.27.3 |
| pfam | HRGMv2_3318_4 | HRGMv2_3318_4_11 | 11557 | 12018 | + | MlaD |
| pfam | HRGMv2_3318_4 | HRGMv2_3318_4_12 | 11999 | 13030 | + | DUF2155 |
| CAZyme | HRGMv2_3318_4 | HRGMv2_3318_4_13 | 13055 | 14011 | + | GT2 |
Gene ID: HRGMv2_3318_4_8
Type: TC
Location: 9414 - 10139 (-)
Type: TC
Location: 9414 - 10139 (-)
Gene ID: HRGMv2_3318_4_9
Type: TC
Location: 10120 - 10860 (-)
Type: TC
Location: 10120 - 10860 (-)
Gene ID: HRGMv2_3318_4_10
Type: TC
Location: 11033 - 11518 (+)
Type: TC
Location: 11033 - 11518 (+)
Gene ID: HRGMv2_3318_4_11
Type: pfam
Location: 11557 - 12018 (+)
Type: pfam
Location: 11557 - 12018 (+)
Gene ID: HRGMv2_3318_4_12
Type: pfam
Location: 11999 - 13030 (+)
Type: pfam
Location: 11999 - 13030 (+)
Gene ID: HRGMv2_3318_4_13
Type: CAZyme
Location: 13055 - 14011 (+)
Type: CAZyme
Location: 13055 - 14011 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
RF32
Family
CAG-239
Genus
HGM16780
Species
HGM16780 sp030536665
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.