Cluster: HRGMv2_3318_CGC11
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3318
- CGC Family ID: CGCFAM_04088
- Continent: North America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3318_57 | HRGMv2_3318_57_1 | 2 | 244 | + | 3.D.6.1.2 |
| TC | HRGMv2_3318_57 | HRGMv2_3318_57_2 | 246 | 821 | + | 3.D.6.1.2 |
| TF | HRGMv2_3318_57 | HRGMv2_3318_57_3 | 933 | 1475 | - | HTH_3 |
| TC | HRGMv2_3318_57 | HRGMv2_3318_57_4 | 1854 | 3242 | - | 2.A.1.1.106 |
| CAZyme | HRGMv2_3318_57 | HRGMv2_3318_57_5 | 3397 | 4716 | + | GH103 |
Gene ID: HRGMv2_3318_57_1
Type: TC
Location: 2 - 244 (+)
Type: TC
Location: 2 - 244 (+)
Gene ID: HRGMv2_3318_57_2
Type: TC
Location: 246 - 821 (+)
Type: TC
Location: 246 - 821 (+)
Gene ID: HRGMv2_3318_57_3
Type: TF
Location: 933 - 1475 (-)
Type: TF
Location: 933 - 1475 (-)
Gene ID: HRGMv2_3318_57_4
Type: TC
Location: 1854 - 3242 (-)
Type: TC
Location: 1854 - 3242 (-)
Gene ID: HRGMv2_3318_57_5
Type: CAZyme
Location: 3397 - 4716 (+)
Type: CAZyme
Location: 3397 - 4716 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
RF32
Family
CAG-239
Genus
HGM16780
Species
HGM16780 sp030536665
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.