Cluster: HRGMv2_3318_CGC1
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3318
- Continent: North America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3318_3 | HRGMv2_3318_3_34 | 34186 | 37038 | + | GT111 | GT2 | GT8 |
| STP | HRGMv2_3318_3 | HRGMv2_3318_3_35 | 37052 | 37636 | + | Sigma70_r4_2 |
| TF | HRGMv2_3318_3 | HRGMv2_3318_3_36 | 37606 | 38166 | - | GerE |
| TC | HRGMv2_3318_3 | HRGMv2_3318_3_37 | 38383 | 39549 | - | 2.A.1.2.97 |
Gene ID: HRGMv2_3318_3_34
Type: CAZyme
Location: 34186 - 37038 (+)
Type: CAZyme
Location: 34186 - 37038 (+)
Gene ID: HRGMv2_3318_3_35
Type: STP
Location: 37052 - 37636 (+)
Type: STP
Location: 37052 - 37636 (+)
Gene ID: HRGMv2_3318_3_36
Type: TF
Location: 37606 - 38166 (-)
Type: TF
Location: 37606 - 38166 (-)
Gene ID: HRGMv2_3318_3_37
Type: TC
Location: 38383 - 39549 (-)
Type: TC
Location: 38383 - 39549 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
RF32
Family
CAG-239
Genus
HGM16780
Species
HGM16780 sp030536665
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.