dbCAN Logo

Cluster: HRGMv2_3315_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3315_2 HRGMv2_3315_2_36 43704 44648 + CE11
NULL(UNKNOWN) HRGMv2_3315_2 HRGMv2_3315_2_37 45101 45550 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_3315_2 HRGMv2_3315_2_38 45563 46006 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3315_2 HRGMv2_3315_2_39 46056 47576 - 2.A.20.3.1
pfam HRGMv2_3315_2 HRGMv2_3315_2_40 47598 48305 - PhoU_div
TC HRGMv2_3315_2 HRGMv2_3315_2_41 48616 49386 - 3.A.1.11.1
TC HRGMv2_3315_2 HRGMv2_3315_2_42 49380 50243 - 3.A.1.11.1
TC HRGMv2_3315_2 HRGMv2_3315_2_43 50236 51348 - 3.A.1.11.1
Gene ID: HRGMv2_3315_2_36
Type: CAZyme
Location: 43704 - 44648 (+)
Gene ID: HRGMv2_3315_2_37
Type:
Location: 45101 - 45550 (+)
Gene ID: HRGMv2_3315_2_38
Type:
Location: 45563 - 46006 (+)
Gene ID: HRGMv2_3315_2_39
Type: TC
Location: 46056 - 47576 (-)
Gene ID: HRGMv2_3315_2_40
Type: pfam
Location: 47598 - 48305 (-)
Gene ID: HRGMv2_3315_2_41
Type: TC
Location: 48616 - 49386 (-)
Gene ID: HRGMv2_3315_2_42
Type: TC
Location: 49380 - 50243 (-)
Gene ID: HRGMv2_3315_2_43
Type: TC
Location: 50236 - 51348 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Pseudomonadota
→
Class
Alphaproteobacteria
→
Order
RF32
→
Family
CAG-977
→
Genus
UBA11549
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List