Cluster: HRGMv2_3315_CGC1
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3315
- CGC Family ID: CGCFAM_10356
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3315_2 | HRGMv2_3315_2_11 | 11589 | 12449 | - | GT2 |
| pfam | HRGMv2_3315_2 | HRGMv2_3315_2_12 | 12589 | 13356 | + | RsmJ |
| pfam | HRGMv2_3315_2 | HRGMv2_3315_2_13 | 13462 | 14631 | + | HlyD_3 | Biotin_lipoyl_2 | HlyD_D23 |
| TC | HRGMv2_3315_2 | HRGMv2_3315_2_14 | 14638 | 17757 | + | 2.A.6.2.22 |
| TC | HRGMv2_3315_2 | HRGMv2_3315_2_15 | 17750 | 19138 | + | 3.A.1.105.4 |
Gene ID: HRGMv2_3315_2_11
Type: CAZyme
Location: 11589 - 12449 (-)
Type: CAZyme
Location: 11589 - 12449 (-)
Gene ID: HRGMv2_3315_2_12
Type: pfam
Location: 12589 - 13356 (+)
Type: pfam
Location: 12589 - 13356 (+)
Gene ID: HRGMv2_3315_2_13
Type: pfam
Location: 13462 - 14631 (+)
Type: pfam
Location: 13462 - 14631 (+)
Gene ID: HRGMv2_3315_2_14
Type: TC
Location: 14638 - 17757 (+)
Type: TC
Location: 14638 - 17757 (+)
Gene ID: HRGMv2_3315_2_15
Type: TC
Location: 17750 - 19138 (+)
Type: TC
Location: 17750 - 19138 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
RF32
Family
CAG-977
Genus
UBA11549
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.