Cluster: HRGMv2_3314_CGC5
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3314
- CGC Family ID: CGCFAM_03761
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3314_1 | HRGMv2_3314_1_125 | 134144 | 135217 | + | 2.A.86.1.5 |
| pfam | HRGMv2_3314_1 | HRGMv2_3314_1_126 | 135210 | 135902 | + | Hda_lid |
| CAZyme | HRGMv2_3314_1 | HRGMv2_3314_1_127 | 135926 | 136975 | + | GT2 |
| pfam | HRGMv2_3314_1 | HRGMv2_3314_1_128 | 137126 | 138439 | + | tRNA-synt_2b | HGTP_anticodon |
| TC | HRGMv2_3314_1 | HRGMv2_3314_1_129 | 138458 | 139708 | + | 3.A.1.125.1 |
| TC | HRGMv2_3314_1 | HRGMv2_3314_1_130 | 139701 | 140468 | + | 3.A.1.125.1 |
Gene ID: HRGMv2_3314_1_125
Type: TC
Location: 134144 - 135217 (+)
Type: TC
Location: 134144 - 135217 (+)
Gene ID: HRGMv2_3314_1_126
Type: pfam
Location: 135210 - 135902 (+)
Type: pfam
Location: 135210 - 135902 (+)
Gene ID: HRGMv2_3314_1_127
Type: CAZyme
Location: 135926 - 136975 (+)
Type: CAZyme
Location: 135926 - 136975 (+)
Gene ID: HRGMv2_3314_1_128
Type: pfam
Location: 137126 - 138439 (+)
Type: pfam
Location: 137126 - 138439 (+)
Gene ID: HRGMv2_3314_1_129
Type: TC
Location: 138458 - 139708 (+)
Type: TC
Location: 138458 - 139708 (+)
Gene ID: HRGMv2_3314_1_130
Type: TC
Location: 139701 - 140468 (+)
Type: TC
Location: 139701 - 140468 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
RF32
Family
CAG-977
Genus
UBA11549
Species
UBA11549 sp900550445
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.