Cluster: HRGMv2_3314_CGC3
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3314
- CGC Family ID: CGCFAM_10356
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3314_1 | HRGMv2_3314_1_41 | 44893 | 46281 | - | 3.A.1.105.4 |
| TC | HRGMv2_3314_1 | HRGMv2_3314_1_42 | 46274 | 49393 | - | 2.A.6.2.22 |
| pfam | HRGMv2_3314_1 | HRGMv2_3314_1_43 | 49400 | 50569 | - | HlyD_3 | Biotin_lipoyl_2 | HlyD_D23 |
| pfam | HRGMv2_3314_1 | HRGMv2_3314_1_44 | 50673 | 51440 | - | RsmJ |
| CAZyme | HRGMv2_3314_1 | HRGMv2_3314_1_45 | 51579 | 52439 | + | GT2 |
| TC | HRGMv2_3314_1 | HRGMv2_3314_1_46 | 52443 | 53822 | - | 2.A.50.2.1 |
Gene ID: HRGMv2_3314_1_41
Type: TC
Location: 44893 - 46281 (-)
Type: TC
Location: 44893 - 46281 (-)
Gene ID: HRGMv2_3314_1_42
Type: TC
Location: 46274 - 49393 (-)
Type: TC
Location: 46274 - 49393 (-)
Gene ID: HRGMv2_3314_1_43
Type: pfam
Location: 49400 - 50569 (-)
Type: pfam
Location: 49400 - 50569 (-)
Gene ID: HRGMv2_3314_1_44
Type: pfam
Location: 50673 - 51440 (-)
Type: pfam
Location: 50673 - 51440 (-)
Gene ID: HRGMv2_3314_1_45
Type: CAZyme
Location: 51579 - 52439 (+)
Type: CAZyme
Location: 51579 - 52439 (+)
Gene ID: HRGMv2_3314_1_46
Type: TC
Location: 52443 - 53822 (-)
Type: TC
Location: 52443 - 53822 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
RF32
Family
CAG-977
Genus
UBA11549
Species
UBA11549 sp900550445
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.